View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_6 (Length: 532)
Name: NF13149_high_6
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 29007119 - 29006608
Alignment:
| Q |
1 |
tgtgtttgtgtctgtgcttcatagcgatcgacgaattataaataaaaatgaatgaaaaattaaagagaatgagttagttatacctggaaagttagcgaag |
100 |
Q |
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| T |
29007119 |
tgtgtttgtgtccgtgcttcatagcaatcgacgaattataaataaagatgaatgaaaaattaaagagaatgagttagttatacctggaaagttagcgaag |
29007020 |
T |
|
| Q |
101 |
aaaacgaaaagtgcaagagaaattctagtattggacgcagacattggagtga--gagagagaggatgagaaatgaaagaaaatggaagttgaagaagtcc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29007019 |
aaaacgaaaagtgcaagagaaattctagtattggacgcagacattggagggatagagagagaggttgagaaatgaaagaaaatggaagttgaagaagtcc |
29006920 |
T |
|
| Q |
199 |
tttatttcaaaatgttgttagtttgaaggaagagtggaagacttgacgtggccacacacgattggttggtgggttcgggagtctagtctaagatacgtgt |
298 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29006919 |
tttatttcaaaatgttgtta-tttgaaggaagaatggaagacttgacgtggccacacgcgattggttggtgggttggggagtctagtctaagatacgtgt |
29006821 |
T |
|
| Q |
299 |
gcattacgcacctgattgctgctaattcaataactttgccgccaataacttccattgacttcataataatcaactactatcatcacgactcagtctagaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29006820 |
gcattacgcacctgattgctgctaattcaataactttgccgccaataacttccattgacttcataataatca---actatcatcacgactcagtctagaa |
29006724 |
T |
|
| Q |
399 |
tgcgtaggattaagttgattggttttgtggtcaatttttataatttgtttatgctattgtgctattgtcatccctattgtcgtcaatttttatgattttt |
498 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29006723 |
tgcataggattaagttgattggttttgtggtcaatttttataatttgtttatgctattgtgctattgtcatccctattgtcgtcaatttttatga-tttt |
29006625 |
T |
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| Q |
499 |
tatttatgctagatatt |
515 |
Q |
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||||||||||||||||| |
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| T |
29006624 |
tatttatgctagatatt |
29006608 |
T |
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