View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_high_9 (Length: 443)
Name: NF13149_high_9
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 32314785 - 32314482
Alignment:
| Q |
1 |
ataatactattcgaagcacatgtgtgcgtgtgatgttttttgagttaaatctaaatgtcttctcttatcgaagacaattatattcgaggccaacataata |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32314785 |
ataatactgttcgaagcacatgtgtgcgtgtgatgttttttgagttaaatctaaatgtcttctcttatcgaagacaattatattcgaggccaacataata |
32314686 |
T |
|
| Q |
101 |
agaagtgtacgatctctctccaagaaatttgtttgtcagaaaagatcaaaagagggatccctcactaaggagtatccttgaacacattctcgccactcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32314685 |
agaagtgtacgatctctctccaagaaatttgtttgtcagaaaagatcaaaagagggatccctcactaaggagtatccttgaacacattctcgccactcga |
32314586 |
T |
|
| Q |
201 |
agagctagcattactacaactaggacaatcccattgggttatttgtgtgtgatgggaagtgagaaagttctactccgacattttttaaacagacgatagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32314585 |
agagctagcattactacaactaggacaatcccattgggttatttgtgtgtgatgggaagtgagaaagttctagtccgacattttttaaacagacgatagt |
32314486 |
T |
|
| Q |
301 |
ttac |
304 |
Q |
| |
|
|||| |
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|
| T |
32314485 |
ttac |
32314482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 326 - 429
Target Start/End: Complemental strand, 32314484 - 32314381
Alignment:
| Q |
326 |
tacctaataagtaataatgttctataaactctaaacagccatttgggtaaaatgggcctgactaaagatatgaaattcactcttcaatcatgcaaagtaa |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32314484 |
tacctaataagtaataatgttctataaactctaaacagccatttgggtaaaatgggcctgactaaagatatgaaattcactcttcaatcatgcaaagtaa |
32314385 |
T |
|
| Q |
426 |
gagg |
429 |
Q |
| |
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|||| |
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| T |
32314384 |
gagg |
32314381 |
T |
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