View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13149_low_1 (Length: 962)

Name: NF13149_low_1
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13149_low_1
NF13149_low_1
[»] chr6 (9 HSPs)
chr6 (229-735)||(17872634-17873132)
chr6 (229-735)||(17862059-17862546)
chr6 (809-946)||(17872253-17872390)
chr6 (810-946)||(17861651-17861790)
chr6 (8-116)||(17862660-17862768)
chr6 (8-91)||(17874477-17874560)
chr6 (810-922)||(17861798-17861913)
chr6 (86-123)||(17873238-17873275)
chr6 (891-922)||(17861921-17861952)
[»] chr1 (6 HSPs)
chr1 (613-702)||(45036293-45036382)
chr1 (868-931)||(45009387-45009450)
chr1 (640-702)||(45041579-45041641)
chr1 (869-943)||(45041251-45041325)
chr1 (648-702)||(45043653-45043707)
chr1 (666-703)||(46175757-46175794)
[»] chr3 (1 HSPs)
chr3 (620-702)||(11390367-11390449)
[»] chr2 (1 HSPs)
chr2 (20-90)||(9715335-9715405)
[»] scaffold0795 (1 HSPs)
scaffold0795 (649-702)||(3644-3697)


Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 229 - 735
Target Start/End: Complemental strand, 17873132 - 17872634
Alignment:
Q  229 gtctccctttcttggaaggaattgtgtggggccaagatgaagatacaaagaaccacacccgnnnnnnnaccatactattaccgcgttcaattattaaagt 328  Q
    ||||| ||||||||||||||   ||||||||||||||||||||||||||||||| |||||        ||||||||||||||||||| ||||||||||||    
T  17873132 gtctcactttcttggaagga---gtgtggggccaagatgaagatacaaagaacctcaccc-----cccaccatactattaccgcgtttaattattaaagt 17873041  T
Q  329 ggagcacaatacttttcttgacttcggttgactagttagtatctatatattgcattgtacaaacctctcatattcacttcacaacttcatctcatatact 428  Q
    ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17873040 ggaccacactacttttcttgacttcagttgactagttagtatctatatattgcattgtacaaacctctcatcttcacttcacaacttcatctcatatact 17872941  T
Q  429 cttttcatgttcaaattctatagctccaataccttagctcttcttttaaattttaaccaacaattctgatttattgattatcaaaaagctttattgaaaa 528  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17872940 cttttcatcttcaaattctatagctccaataccttagctcttctttaaaattttaaccaacaattctgatttattggttatcaaaaagctttattgaaaa 17872841  T
Q  529 tgatggtaagaactagatccttgtccattctctctctcactattaattttttctttggattgaatctaaagatcttttgttctgttttgttacagaaact 628  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||    
T  17872840 tgatggtaagaactagatccttgtccattctctctctcactaataattttttcttagcattgaatctaaagatcttttattctgttttgttgcagaaact 17872741  T
Q  629 agtattgaaggtggatatacatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaacgtacatgtctagtttcaa 728  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17872740 agtattgaaggtggatatatatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaacgtacatgtctagtttcaa 17872641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 229 - 735
Target Start/End: Complemental strand, 17862546 - 17862059
Alignment:
Q  229 gtctccctttcttggaaggaattgtgtggggccaagatgaagatacaaagaaccacacccgnnnnnnnaccatactattaccgcgttcaattattaaagt 328  Q
    ||||| |||||||||||||||||||||| |||||  ||||||||||||||||||||||||        ||||||||||||||||||| ||||||||||||    
T  17862546 gtctcactttcttggaaggaattgtgtgaggccataatgaagatacaaagaaccacaccc-----tccaccatactattaccgcgtttaattattaaagt 17862452  T
Q  329 ggagcacaatacttttcttgacttcggttgactagttagtatctatatattgcattgtacaaacctctcatattcacttcacaacttcatctcatatact 428  Q
    ||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |               
T  17862451 ggaccacactacttttcttgacttcagttgactagttagtatctatatattgcattgtacaaacctctcatcttcacttcacaa-ttaa----------- 17862364  T
Q  429 cttttcatgttcaaattctatagctccaataccttagctcttcttttaaattttaaccaacaattctgatttattgattatcaaaaagctttattgaaaa 528  Q
     |||| |    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17862363 -ttttaaccaacaa-ttctatagctccaataccttagctcttctttaaaattttaaccaacaattctgatttattggttatcaaaaagctttattgaaaa 17862266  T
Q  529 tgatggtaagaactagatccttgtccattctctctctcactattaattttttctttggattgaatctaaagatcttttgttctgttttgttacagaaact 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  17862265 tgatggtaagaactagatccttgtccattctctctctcactattaattttttctttgcattgaatctaaagatattttgttctgttttgttacagaaact 17862166  T
Q  629 agtattgaaggtggatatacatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaacgtacatgtctagtttcaa 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17862165 agtattgaaggtggatatacatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggtaatgtcaatgtacatgtctagtttcaa 17862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 809 - 946
Target Start/End: Complemental strand, 17872390 - 17872253
Alignment:
Q  809 ctcatgatataacattgtaatacctttaagttctttgctaaaattgtattggtatattatttgcaggggtagagtcagtttctgtggacatgaaagacaa 908  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17872390 ctcatgatataacattgtaatacctttaatttttttgctaaaattgtattggtatattatttgcaggggtagaatcagtttctgtggacatgaaagacaa 17872291  T
Q  909 gaaattaaccttaactggagacacagatccagtacatg 946  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17872290 gaaattaaccttaactggagacacagatccagtacatg 17872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 810 - 946
Target Start/End: Complemental strand, 17861790 - 17861651
Alignment:
Q  810 tcatgatataacattgtaatacctttaagttctttg---ctaaaattgtattggtatattatttgcaggggtagagtcagtttctgtggacatgaaagac 906  Q
    |||| ||||||||||| | ||||||||| || |||    ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  17861790 tcataatataacattggattacctttaatttttttcttcctaaaatcgtattgctatattatttgcaggggtagaatcagtttctgtggacatgaaagac 17861691  T
Q  907 aagaaattaaccttaactggagacacagatccagtacatg 946  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17861690 aagaaattaaccttaactggagacacagatccagtacatg 17861651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 17862768 - 17862660
Alignment:
Q  8 gacatcatcaatgttgtaaatctagagacatagatattccataaatttaaatatagtcaaatttataggcttttatactttgttaatatatgctattgac 107  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||    
T  17862768 gacataatcaacgttataaatctagagacatagatattccataaatataaatatagtcaaatttgtaggcttttatactttgtaaatatatgttattgac 17862669  T
Q  108 atgaatgtt 116  Q
    |||| ||||    
T  17862668 atgattgtt 17862660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 17874560 - 17874477
Alignment:
Q  8 gacatcatcaatgttgtaaatctagagacatagatattccataaatttaaatatagtcaaatttataggcttttatactttgtt 91  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  17874560 gacatcatcaacgttgtaaatctggagacatagatattctataaatttaaatatagtcaaatttgtaggcttttatactttgtt 17874477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 810 - 922
Target Start/End: Complemental strand, 17861913 - 17861798
Alignment:
Q  810 tcatgatataacattgtaatacctttaagttctttg---ctaaaattgtattggtatattatttgcaggggtagagtcagtttctgtggacatgaaagac 906  Q
    |||| ||||||||||| | ||||||||| || |||    ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  17861913 tcataatataacattggattacctttaatttttttcttcctaaaatcgtattgctatattatttgcaggggtagaatcagtttctgtggacatgaaagac 17861814  T
Q  907 aagaaattaaccttaa 922  Q
    ||||||||||||||||    
T  17861813 aagaaattaaccttaa 17861798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 17873275 - 17873238
Alignment:
Q  86 tttgttaatatatgctattgacatgaatgttccgagtg 123  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  17873275 tttgttaatatatgctattgacatgaatgttgcgagtg 17873238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 891 - 922
Target Start/End: Complemental strand, 17861952 - 17861921
Alignment:
Q  891 tgtggacatgaaagacaagaaattaaccttaa 922  Q
    ||||||||||||||||||||||||||||||||    
T  17861952 tgtggacatgaaagacaagaaattaaccttaa 17861921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 613 - 702
Target Start/End: Complemental strand, 45036382 - 45036293
Alignment:
Q  613 ttttgttacagaaactagtattgaaggtggatatacatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta 702  Q
    |||||||||||||| | || || ||| |||| ||| |||| |||| || ||||||||||||||||||  |||||||||||||||||||||    
T  45036382 ttttgttacagaaagttgtgttaaagttggaaataaatgaagacaaaatcaagcaaaaagctatgaaagcagtctctggcctttcaggta 45036293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 868 - 931
Target Start/End: Complemental strand, 45009450 - 45009387
Alignment:
Q  868 tttgcaggggtagagtcagtttctgtggacatgaaagacaagaaattaaccttaactggagaca 931  Q
    ||||||||||| |||||||||||| |||| ||||| ||| ||||||| |||||||| |||||||    
T  45009450 tttgcaggggttgagtcagtttctttggatatgaaggaccagaaattgaccttaacaggagaca 45009387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 640 - 702
Target Start/End: Complemental strand, 45041641 - 45041579
Alignment:
Q  640 tggatatacatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta 702  Q
    |||| ||| |||| || |||| ||||||||| ||||||||| |||||||||||||||||||||    
T  45041641 tggaaataaatgaagatagaatcaagcaaaaggctatgaaggcagtctctggcctttcaggta 45041579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 869 - 943
Target Start/End: Complemental strand, 45041325 - 45041251
Alignment:
Q  869 ttgcaggggtagagtcagtttctgtggacatgaaagacaagaaattaaccttaactggagacacagatccagtac 943  Q
    |||||||||| |||||||||||  | |||||||||||||||||| | |||||||  ||||| |  ||||||||||    
T  45041325 ttgcaggggttgagtcagtttcaatagacatgaaagacaagaaaatgaccttaataggagatattgatccagtac 45041251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 648 - 702
Target Start/End: Complemental strand, 45043707 - 45043653
Alignment:
Q  648 catgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta 702  Q
    ||||| |||| || ||| ||||||||||||||| |||||||||||||||| ||||    
T  45043707 catgaagacaaaatcaaacaaaaagctatgaaggcagtctctggcctttccggta 45043653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 703
Target Start/End: Complemental strand, 46175794 - 46175757
Alignment:
Q  666 caaaaagctatgaagacagtctctggcctttcaggtaa 703  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  46175794 caaaaagctatgaaggcagtctctggcctctcaggtaa 46175757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 620 - 702
Target Start/End: Original strand, 11390367 - 11390449
Alignment:
Q  620 acagaaactagtattgaaggtggatatacatgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta 702  Q
    ||||||| |||| |||||||||||  |  || |||| |||| ||||||||||| |||||||||||| ||| ||||||||||||    
T  11390367 acagaaagtagtgttgaaggtggacttttataatgatagaatcaagcaaaaagttatgaagacagtatctagcctttcaggta 11390449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 9715405 - 9715335
Alignment:
Q  20 gttgtaaatctagagacatagatattccataaatttaaatatagtcaaatttataggcttttatactttgt 90  Q
    |||||||||| |||||||||||||||||  | | || ||||||||||||  | ||||||||| ||||||||    
T  9715405 gttgtaaatccagagacatagatattccgcagacttgaatatagtcaaacgtgtaggcttttgtactttgt 9715335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 702
Target Start/End: Complemental strand, 3697 - 3644
Alignment:
Q  649 atgatgacagaaccaagcaaaaagctatgaagacagtctctggcctttcaggta 702  Q
    ||||||| |||| |||| ||||||| ||||||||||| ||||| ||||||||||    
T  3697 atgatgatagaatcaagaaaaaagccatgaagacagtatctggtctttcaggta 3644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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