View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13149_low_11 (Length: 417)
Name: NF13149_low_11
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 32 - 401
Target Start/End: Complemental strand, 13419833 - 13419464
Alignment:
| Q |
32 |
aagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagta |
131 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| |||||| | || |||||||| ||||| |||||| ||||| ||||||| ||||| |||||||||||| |
|
|
| T |
13419833 |
aagaaatgagtagtaaataattgttcaatttgtttataatttatttaataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagta |
13419734 |
T |
|
| Q |
132 |
aaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13419733 |
gaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaa |
13419634 |
T |
|
| Q |
232 |
catttacagtcacatgtggtgcaaagtatcgtgatggcacggtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13419633 |
catttacagtcacatgtggtgcaaagtatcgtgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcat |
13419534 |
T |
|
| Q |
332 |
tcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctctt |
401 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13419533 |
tcctgatagcttacctcttgatgctgccggtcctcttctttgcgctggaatcacagtgtatagtcctctt |
13419464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 401
Target Start/End: Complemental strand, 13447396 - 13447015
Alignment:
| Q |
20 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttggttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447396 |
tgagtcaatcaaaagaaacgagtagaaaataattgctcaatttcgttataactaatgtaataaatataggcacgaacttacgggtgtagtaacagaggtg |
13447297 |
T |
|
| Q |
120 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttgaga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||| |
|
|
| T |
13447296 |
ggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattcatgtcgttcttgcgaaaattgtgccgacgatattgaga |
13447197 |
T |
|
| Q |
220 |
attactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcacggtcacatatggaggttactccgactcaatggttgcagacgagcactt |
319 |
Q |
| |
|
|||||||| | | || ||| |||| || |||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13447196 |
attactgcaccaaatatactcaaacattcaatggtaagtctcgtgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactt |
13447097 |
T |
|
| Q |
320 |
tgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctctt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
13447096 |
tgtgattcgcattcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctctt |
13447015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 87 - 401
Target Start/End: Complemental strand, 13426669 - 13426355
Alignment:
| Q |
87 |
aggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtc |
186 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
13426669 |
aggcatgaacttgcgggtattgtaacagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattcatgtc |
13426570 |
T |
|
| Q |
187 |
gttcatgccaaaattgtgctgacgatcttgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcacggtcacatatggagg |
286 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
13426569 |
gttcatgcgaaaattgtgcggaagatcttgagaattactgcccccaacaaacagttacatgtggtgctaagtatcgtgatggcagcgtcacatatggagg |
13426470 |
T |
|
| Q |
287 |
ttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataaca |
386 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
13426469 |
ttattccgactcaatggttgcagatgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggagtcaca |
13426370 |
T |
|
| Q |
387 |
gtgtatagtcctctt |
401 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13426369 |
gtgtatagtcctctt |
13426355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 75 - 401
Target Start/End: Complemental strand, 13413445 - 13413119
Alignment:
| Q |
75 |
tgtaataaatataggcacgaacttacgggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatgg |
174 |
Q |
| |
|
||||||||||| ||||| || ||| ||||| |||||||||| || ||||||||||| | ||||||||||||||||||||||| ||||| || ||| || |
|
|
| T |
13413445 |
tgtaataaatacaggcatgagcttgcgggtatagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttga |
13413346 |
T |
|
| Q |
175 |
ttgattcatgtcgttcatgccaaaattgtgctgacgatcttgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcacggt |
274 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||| || || |
|
|
| T |
13413345 |
ttgattcatgtcgatcatgccaagattgtaatgacaatcttgagaattactgccccaaatttgtagtcacatgtggtgccaagtatcgtgatggaaccgt |
13413246 |
T |
|
| Q |
275 |
cacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgc |
374 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |||| |||||||| ||||| |
|
|
| T |
13413245 |
cacttatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgacaacatacctcttgaatttgctggtcctctcctttgt |
13413146 |
T |
|
| Q |
375 |
gctggaataacagtgtatagtcctctt |
401 |
Q |
| |
|
||||| | || || |||||||||||| |
|
|
| T |
13413145 |
gctggtgtcaccgtatatagtcctctt |
13413119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 106 - 401
Target Start/End: Original strand, 13388988 - 13389283
Alignment:
| Q |
106 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgc |
205 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || |||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
13388988 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattcatgtcgatcatgtcaaaattgtgt |
13389087 |
T |
|
| Q |
206 |
tgacgatcttgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcacggtcacatatggaggttactccgactcaatggtt |
305 |
Q |
| |
|
|||| ||||||| |||||||| || |||||||| ||||||||||||| |||||||| ||||| ||| ||||||||||||||| || |||||| ||||| |
|
|
| T |
13389088 |
tgacaatcttgaaaattactgtcccacatttactttcacatgtggtgccaagtatcgcgatggaacgagcacatatggaggttattctgactcattggtt |
13389187 |
T |
|
| Q |
306 |
gcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctctt |
401 |
Q |
| |
|
||||| ||| |||| ||| ||| |||||||||| | ||||| ||||| | ||| | ||||| ||||| ||||| || || ||||| ||||||||| |
|
|
| T |
13389188 |
gcagatgagaacttcgtggttcacattcctgatggattaccacttgaagctgctgcacctctcctttgtgctgggatcactgtgtacagtcctctt |
13389283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 106 - 401
Target Start/End: Complemental strand, 13454263 - 13453968
Alignment:
| Q |
106 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgc |
205 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| ||||||||||||| ||| |||||||||| | |||||||||| |||| ||||| |||||||||| |
|
|
| T |
13454263 |
tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactcatgtcaaaattgtgt |
13454164 |
T |
|
| Q |
206 |
tgacgatcttgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcacggtcacatatggaggttactccgactcaatggtt |
305 |
Q |
| |
|
||| |||||||||||||||| || ||| ||| |||| |||| | || || ||||||| || ||| ||||||| | ||| |||||||||||| |
|
|
| T |
13454163 |
tgataatcttgagaattactgtccccaattgacactcactgatggttccaaatacagtgatggaaccagcactcatggaggcttctctgactcaatggtt |
13454064 |
T |
|
| Q |
306 |
gcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctctt |
401 |
Q |
| |
|
| ||||||||||||||| |||||||||| ||| ||||||||||||| || | |||||| ||||| ||||| ||||| || |||||||||||| |
|
|
| T |
13454063 |
tccgacgagcactttgtgtttcgcattccagatcagttacctcttgatgcagctgctcctctcctttgtgctgggataaccgtatatagtcctctt |
13453968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 114 - 401
Target Start/End: Original strand, 13393403 - 13393690
Alignment:
| Q |
114 |
gaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatc |
213 |
Q |
| |
|
||||| |||||||||||| | ||||| ||| ||||||||||||| |||||||||| | | |||||||| |||||| |||||||||| |||| || ||| |
|
|
| T |
13393403 |
gaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattcgtgtcgtgcatgccaaaactgtgaggaaaatc |
13393502 |
T |
|
| Q |
214 |
ttgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcacggtcacatatggaggttactccgactcaatggttgcagacga |
313 |
Q |
| |
|
|||||||||| ||||| | | ||| |||| | |||| || || ||||||| | ||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
13393503 |
ttgagaattattgccctaaacaaacaaatacatatagtgccaaatacagtgatggaagcatcacatatggagggtactctgactcaatggttgcagatga |
13393602 |
T |
|
| Q |
314 |
gcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctctt |
401 |
Q |
| |
|
||||||| | ||| |||||||||| ||||||| ||||| ||| | |||||| ||||| || || || || ||||||||||||||| |
|
|
| T |
13393603 |
gcactttatagttcacattcctgatggcttaccacttgaatctgctgctcctctcctttgtgccggtattactgtgtatagtcctctt |
13393690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 13385167 - 13385290
Alignment:
| Q |
106 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgc |
205 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || |||||||||||||| ||||| || ||||| ||||||||||||| || || |||||||||| |
|
|
| T |
13385167 |
tagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacataattgattcatgtcgatcgtgtcaaaattgtgt |
13385266 |
T |
|
| Q |
206 |
tgacgatcttgagaattactgccc |
229 |
Q |
| |
|
|||| ||||||| ||||||||||| |
|
|
| T |
13385267 |
tgacaatcttgaaaattactgccc |
13385290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 13451182 - 13451082
Alignment:
| Q |
106 |
tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgc |
205 |
Q |
| |
|
|||| ||| |||| ||||||||||| |||||| ||| ||| ||||| |||| ||||||||| | | |||||||| |||| ||||||||||||||||| |
|
|
| T |
13451182 |
tagttacacaggttggaagcaaagtggtaaagttcaaaattgaagacagagttagtgtgggatgcttcgttgattcttgtcaatcatgccaaaattgtgc |
13451083 |
T |
|
| Q |
206 |
t |
206 |
Q |
| |
|
| |
|
|
| T |
13451082 |
t |
13451082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 394
Target Start/End: Complemental strand, 13379140 - 13379009
Alignment:
| Q |
263 |
tgatggcacggtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggt |
362 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||| | ||||||| ||||| |||||| | | || ||||| ||| |||| | ||||||| ||||| | |
|
|
| T |
13379140 |
tgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtccgtattcccgatgccttatcacttgatgctgccgct |
13379041 |
T |
|
| Q |
363 |
cctcttctttgcgctggaataacagtgtatag |
394 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| |
|
|
| T |
13379040 |
cctctcctttgtgctgggatcacagtgtatag |
13379009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 394
Target Start/End: Complemental strand, 13373333 - 13373213
Alignment:
| Q |
274 |
tcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttg |
373 |
Q |
| |
|
||||||||||||| ||||| || | |||||||| |||| ||||| ||||| || ||||||||| |||||| ||||||| || | |||||||||||| |
|
|
| T |
13373333 |
tcacatatggaggctactctgataccatggttgcccacgaacacttcgtgatccgtattcctgatgccttaccacttgatgccgctgctcctcttctttg |
13373234 |
T |
|
| Q |
374 |
cgctggaataacagtgtatag |
394 |
Q |
| |
|
|| || || ||||| ||||| |
|
|
| T |
13373233 |
tgcggggatcacagtatatag |
13373213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 117 - 401
Target Start/End: Complemental strand, 47601570 - 47601286
Alignment:
| Q |
117 |
gtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaattgtgctgacgatcttg |
216 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||||| || | |||| | |||||||| | || || |||||||||||||| |||||| |
|
|
| T |
47601570 |
gtgggaagcaaagtagaaaagttcaaagttggagacaaagtgggtgttggcttcatgatcgattcatgcagatcgtgtcaaaattgtgctgaaaatcttg |
47601471 |
T |
|
| Q |
217 |
agaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcacggtcacatatggaggttactccgactcaatggttgcagacgagca |
316 |
Q |
| |
|
| | ||| || || ||||||| |||||||||||| || |||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
47601470 |
aaagttattgtcctcgctttacagccacatgtggtgccaaatatcgtgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagca |
47601371 |
T |
|
| Q |
317 |
ctttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatagtcctctt |
401 |
Q |
| |
|
||||||| ||| |||||| ||| | || || ||||| | | | | |||||||||||| || || || |||||||||||||||||| |
|
|
| T |
47601370 |
ctttgtggttcacattcccgatggtttgccacttgaagctactgctcctcttctttgtgccggtatcacagtgtatagtcctctt |
47601286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 394
Target Start/End: Original strand, 28430367 - 28430659
Alignment:
| Q |
102 |
ggtgtagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagttggtgtgggatacatggttgattcatgtcgttcatgccaaaatt |
201 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| |||| || |||||||||||||| || ||||| || | ||||||| | || || | ||||||||||||| |
|
|
| T |
28430367 |
ggtgaagtaacagaggtgggagacaaggtacaaaaattcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaatt |
28430466 |
T |
|
| Q |
202 |
gtgctgacgatcttgagaattactgcccaacatttacagtcacatgtggtgcaaagtatcgtgatggcacggtcacatatggaggttactccgactcaat |
301 |
Q |
| |
|
| || ||| || |||||||| |||| | | | |||||| ||| | ||| ||| ||||||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
28430467 |
gcaacgaaagtctcgaaaattactgtccaaaagtgattctcacatacggttccaagaatcttgatggcaccatcacatatggaggctactccgacacaat |
28430566 |
T |
|
| Q |
302 |
ggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggaataacagtgtatag |
394 |
Q |
| |
|
||| | ||||| ||||||||| ||||||| ||||| |||||||||||| ||| | |||||| || ||||| || || || |||||||| |
|
|
| T |
28430567 |
ggtcaccgacgaaagctttgtgatcagcattccaaatagcctacctcttgatgctgcagctcctctcctctgcgccgggatcacggtgtatag |
28430659 |
T |
|
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