View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13149_low_12 (Length: 415)

Name: NF13149_low_12
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13149_low_12
NF13149_low_12
[»] chr5 (18 HSPs)
chr5 (190-399)||(10431294-10431503)
chr5 (97-214)||(40323888-40324007)
chr5 (1-78)||(40323825-40323902)
chr5 (107-221)||(8611716-8611829)
chr5 (107-170)||(19608816-19608879)
chr5 (212-312)||(41144635-41144735)
chr5 (107-181)||(41360885-41360959)
chr5 (16-68)||(9784463-9784515)
chr5 (9-55)||(4613063-4613109)
chr5 (97-169)||(844756-844828)
chr5 (97-165)||(31409872-31409940)
chr5 (97-193)||(41174289-41174384)
chr5 (107-180)||(13203125-13203198)
chr5 (96-169)||(42035768-42035842)
chr5 (107-169)||(42644245-42644306)
chr5 (123-204)||(950627-950707)
chr5 (124-169)||(41807236-41807281)
chr5 (36-72)||(36474666-36474702)
[»] chr1 (29 HSPs)
chr1 (97-214)||(27262707-27262824)
chr1 (97-181)||(49805965-49806049)
chr1 (107-207)||(50015527-50015627)
chr1 (107-170)||(26478075-26478138)
chr1 (107-186)||(25580598-25580677)
chr1 (215-290)||(15281371-15281446)
chr1 (215-290)||(31635470-31635545)
chr1 (4-78)||(49806035-49806109)
chr1 (97-169)||(24980830-24980902)
chr1 (97-169)||(24989588-24989660)
chr1 (123-181)||(2507047-2507105)
chr1 (233-290)||(31262587-31262645)
chr1 (111-181)||(42479519-42479587)
chr1 (96-170)||(52698462-52698536)
chr1 (214-315)||(1035572-1035673)
chr1 (215-315)||(8644743-8644850)
chr1 (22-67)||(22167445-22167490)
chr1 (106-163)||(46028374-46028431)
chr1 (6-78)||(7444887-7444959)
chr1 (97-157)||(44529287-44529347)
chr1 (96-139)||(37599669-37599712)
chr1 (97-160)||(44698061-44698124)
chr1 (96-169)||(9682266-9682338)
chr1 (5-78)||(26761235-26761308)
chr1 (5-42)||(44698002-44698039)
chr1 (100-164)||(5173071-5173135)
chr1 (214-290)||(28490555-28490630)
chr1 (129-169)||(32161582-32161622)
chr1 (97-169)||(47235508-47235580)
[»] chr3 (26 HSPs)
chr3 (107-207)||(24487775-24487875)
chr3 (97-179)||(43767320-43767402)
chr3 (1-78)||(43767257-43767334)
chr3 (107-175)||(53248647-53248715)
chr3 (141-220)||(38094344-38094423)
chr3 (215-317)||(13637892-13637994)
chr3 (214-290)||(54787855-54787931)
chr3 (101-204)||(15985277-15985379)
chr3 (96-181)||(23512736-23512820)
chr3 (227-315)||(55158498-55158584)
chr3 (215-290)||(25096311-25096385)
chr3 (102-204)||(43827245-43827347)
chr3 (233-290)||(37919187-37919244)
chr3 (1-77)||(12402299-12402375)
chr3 (97-181)||(31732071-31732155)
chr3 (146-181)||(16897534-16897569)
chr3 (1-60)||(24487702-24487761)
chr3 (107-174)||(42461305-42461372)
chr3 (215-278)||(47006637-47006700)
chr3 (215-290)||(47499429-47499504)
chr3 (97-183)||(50037192-50037278)
chr3 (122-204)||(50173414-50173495)
chr3 (100-169)||(36473127-36473196)
chr3 (233-290)||(48192642-48192699)
chr3 (1-53)||(15496228-15496280)
chr3 (218-290)||(51325532-51325604)
[»] chr6 (16 HSPs)
chr6 (107-213)||(342988-343094)
chr6 (97-213)||(31597487-31597603)
chr6 (107-181)||(2801315-2801390)
chr6 (107-181)||(2817277-2817352)
chr6 (214-281)||(29286007-29286074)
chr6 (97-194)||(2248742-2248839)
chr6 (1-49)||(24396868-24396916)
chr6 (214-281)||(8504506-8504573)
chr6 (16-78)||(9049969-9050031)
chr6 (227-290)||(6469619-6469682)
chr6 (215-252)||(2831425-2831462)
chr6 (5-34)||(6420339-6420368)
chr6 (30-67)||(30623436-30623473)
chr6 (17-78)||(31597589-31597650)
chr6 (5-49)||(2817208-2817252)
chr6 (97-169)||(30326704-30326776)
[»] chr8 (28 HSPs)
chr8 (4-78)||(10409706-10409780)
chr8 (97-212)||(7859087-7859201)
chr8 (97-200)||(39900242-39900343)
chr8 (215-281)||(8867220-8867286)
chr8 (1-78)||(32615803-32615880)
chr8 (214-290)||(39491668-39491744)
chr8 (97-213)||(10409616-10409720)
chr8 (1-72)||(13521779-13521850)
chr8 (1-72)||(13611314-13611385)
chr8 (107-214)||(32615876-32615982)
chr8 (95-169)||(42964813-42964887)
chr8 (214-323)||(41602401-41602510)
chr8 (111-180)||(43471367-43471436)
chr8 (150-213)||(17922228-17922291)
chr8 (1-72)||(29912108-29912177)
chr8 (30-66)||(36967101-36967137)
chr8 (96-167)||(36178479-36178550)
chr8 (215-281)||(7774634-7774700)
chr8 (215-281)||(7791281-7791347)
chr8 (215-281)||(7811865-7811931)
chr8 (116-185)||(31331351-31331421)
chr8 (30-67)||(9580140-9580177)
chr8 (22-67)||(12189611-12189656)
chr8 (22-67)||(12434039-12434084)
chr8 (120-193)||(13244724-13244796)
chr8 (107-168)||(29107275-29107336)
chr8 (116-169)||(41235836-41235889)
chr8 (97-169)||(34085350-34085421)
[»] chr4 (24 HSPs)
chr4 (97-177)||(37626971-37627051)
chr4 (116-214)||(5497795-5497891)
chr4 (103-169)||(48051710-48051776)
chr4 (215-279)||(564168-564232)
chr4 (110-218)||(23567952-23568060)
chr4 (221-280)||(39260036-39260095)
chr4 (122-204)||(4068359-4068440)
chr4 (215-281)||(24743986-24744052)
chr4 (233-315)||(36989837-36989919)
chr4 (22-67)||(17409934-17409979)
chr4 (96-169)||(22478035-22478108)
chr4 (112-169)||(46695650-46695707)
chr4 (97-161)||(54639699-54639763)
chr4 (1-72)||(23568065-23568136)
chr4 (1-72)||(26009752-26009823)
chr4 (96-139)||(56128627-56128670)
chr4 (107-161)||(3775380-3775434)
chr4 (116-170)||(20032588-20032641)
chr4 (107-161)||(27301730-27301783)
chr4 (215-289)||(45249947-45250021)
chr4 (115-168)||(18915583-18915636)
chr4 (30-67)||(19468304-19468341)
chr4 (96-169)||(34701217-34701290)
chr4 (97-223)||(11123493-11123615)
[»] chr2 (17 HSPs)
chr2 (111-194)||(38788767-38788850)
chr2 (97-181)||(1944770-1944854)
chr2 (215-291)||(41890043-41890119)
chr2 (107-170)||(19204418-19204481)
chr2 (142-213)||(26489327-26489398)
chr2 (1-43)||(38788712-38788754)
chr2 (5-78)||(11074569-11074642)
chr2 (214-279)||(36285005-36285070)
chr2 (97-169)||(11074511-11074583)
chr2 (1-52)||(11069706-11069757)
chr2 (215-290)||(39420250-39420325)
chr2 (107-169)||(16011806-16011868)
chr2 (112-170)||(37744064-37744122)
chr2 (228-317)||(25626319-25626408)
chr2 (133-181)||(17910924-17910971)
chr2 (233-281)||(20061130-20061178)
chr2 (110-162)||(20150437-20150489)
[»] chr7 (15 HSPs)
chr7 (215-317)||(26081030-26081132)
chr7 (215-317)||(26104817-26104919)
chr7 (107-169)||(47188459-47188521)
chr7 (96-204)||(28084831-28084938)
chr7 (98-169)||(11663013-11663084)
chr7 (107-170)||(30424883-30424946)
chr7 (142-207)||(8903036-8903100)
chr7 (120-185)||(38140327-38140391)
chr7 (214-290)||(28337233-28337309)
chr7 (214-281)||(27075033-27075100)
chr7 (214-281)||(27203213-27203280)
chr7 (130-205)||(32711692-32711766)
chr7 (110-196)||(12837885-12837970)
chr7 (123-185)||(30824949-30825010)
chr7 (215-317)||(32786792-32786894)
[»] scaffold0542 (1 HSPs)
scaffold0542 (230-317)||(4517-4604)
[»] scaffold0482 (1 HSPs)
scaffold0482 (215-281)||(566-632)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-78)||(29759-29836)
[»] scaffold0328 (1 HSPs)
scaffold0328 (223-279)||(12447-12503)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 190 - 399
Target Start/End: Complemental strand, 10431503 - 10431294
Alignment:
Q  190 ttaggacacttgttaacaggacccaaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttctta 289  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  10431503 ttaggacacttgttaacaagacctaaaaatataacattttaatttttaagaagttatatgcacaacttttaatgtgtatatttctataatgagtttctta 10431404  T
Q  290 aaacgtgatattgaggacacaagttagcgtttacatttttgtcattaataatataaatctatttgctaagaagaaagtgattacatctgtcgaaaacgat 389  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||    
T  10431403 aaatgtgatattgaggacacaagttagcgtttacatttttgttattaataatacaattctatttgctaggaagaaagtgattacatctgtcgaaaacaat 10431304  T
Q  390 acataaaagt 399  Q
    ||||||||||    
T  10431303 acataaaagt 10431294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 40323888 - 40324007
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttct--gcataaaaattatcaattgtttctattttttgaatctttaactagtatccttagg 194  Q
    ||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||  ||||||| |||  ||||||| |  ||||||     
T  40323888 ttgtgtattgaacacattaaaacatcaaaaagtaactttttttttgcataaaaattatcaattgttttcattttttaaattcttaactaatccccttaga 40323987  T
Q  195 acacttgttaacaggaccca 214  Q
    ||||||||||||| ||||||    
T  40323988 acacttgttaacaagaccca 40324007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40323825 - 40323902
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||||||||| |||||||| |||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||    
T  40323825 atgttaacaaatgcccttatggcacttgataataggtttaaaatggaaactttatcttgaaacttgtgtattgaacac 40323902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 8611829 - 8611716
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaac 206  Q
    |||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||| |  ||||||||| ||||| ||| || ||||| ||||||||| |    
T  8611829 aacacattgaaacatcaaaaagcaactttttctacatgaaaattatcaattgtttcca-attttgaatccttaacgagtgtcattagggcacttgttagc 8611731  T
Q  207 aggacccaaaaatat 221  Q
    | ||||| |||||||    
T  8611730 aagaccctaaaatat 8611716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 19608816 - 19608879
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttttt 170  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  19608816 aacacattgaaacattaaaaagtaactttttctacataaaaattatcaattatttctatttttt 19608879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 41144635 - 41144735
Alignment:
Q  212 ccaaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaa 311  Q
    |||||||||||||| ||||| |||||| |||||| |||||| | |||| || |||||||||||||||||| || ||||| | |||   ||||||||||||    
T  41144635 ccaaaaatataacagtttaacttttaaaaagttgaatgcacgacttttgatatgtatatttctataatgagttccttaacatgtgcccttgaggacacaa 41144734  T
Q  312 g 312  Q
    |    
T  41144735 g 41144735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 41360959 - 41360885
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    |||| ||| ||||||||||| | ||| |||||| ||||||| |||||||||||||  ||||||||||||||||||    
T  41360959 aacatattgaaacatcaaaaggcaacattttctacataaaagttatcaattgttttcattttttgaatctttaac 41360885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 9784515 - 9784463
Alignment:
Q  16 cttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtg 68  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  9784515 cttaaggcacttgataagaggtttaaaatagaaattttgtcttgaaatttgtg 9784463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 4613063 - 4613109
Alignment:
Q  9 aagtgcccttagggcacttgataagaggtttaaaatagaaactttgt 55  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||    
T  4613063 aagtgcccttagggcacttgataagaagtctaaaagagaaactttgt 4613109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 844828 - 844756
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||| ||| |||||||| |||||| |||||||||| |||||  ||||||| | |||||||||||| ||||||    
T  844828 ttgtgtattcaacacattgaaacattaaaaagtaacattttcatcataaaattcatcaattgtttccattttt 844756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 31409940 - 31409872
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctat 165  Q
    ||||| ||| ||||||||||||||||  |||||||  |||||| |||| || |||||||||||||||||    
T  31409940 ttgtgtattcaacacattaaaacatcttaaagtaatattttctacatataagttatcaattgtttctat 31409872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 41174384 - 41174289
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttag 193  Q
    ||||||||| |||||||| ||| || ||||||||||||| ||  ||||||| ||| ||||| |||||  |||||||||| ||||| ||| |||||||    
T  41174384 ttgtgcatttaacacattgaaatattaaaaagtaactttgtcaacataaaatttaacaattatttct-ctttttgaatccttaacaagtgtccttag 41174289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 13203198 - 13203125
Alignment:
Q  107 aacacattaaaacatcaaaaag-taactttttctgcataaaaattatcaattgtttctattttttgaatctttaa 180  Q
    |||||||| |||||| |||||  ||||||||||| ||| ||||||||||||| ||| || |||||||||||||||    
T  13203198 aacacattgaaacattaaaaaaataactttttctacatgaaaattatcaattattttta-tttttgaatctttaa 13203125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 42035768 - 42035842
Alignment:
Q  96 attgtgcattgaacacatt-aaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||| ||| |||||||| |||| || |||||| |||||| | | ||||||||||||||||||| |||||||||    
T  42035768 attgtgtatttaacacattgaaaatattaaaaagcaactttatttacataaaaattatcaattgtgtctattttt 42035842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 42644245 - 42644306
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||||| ||| |||||||||||| ||||| | |||| ||||||||||||||||| ||||||    
T  42644245 aacacattgaaatatcaaaaagtaatttttt-tacatagaaattatcaattgtttccattttt 42644306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 950707 - 950627
Alignment:
Q  123 aaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgtta 204  Q
    ||||||||||||||||| |||||||  || |||||| || | ||||||||||| |||||||||  ||| ||| |||||||||    
T  950707 aaaaagtaactttttctacataaaatctagcaattg-ttatcttttttgaatccttaactagtgccctaagggcacttgtta 950627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 41807281 - 41807236
Alignment:
Q  124 aaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||||||||||||| ||||||| |||  ||||||||||||||||    
T  41807281 aaaagtaactttttctacataaaatttagtaattgtttctattttt 41807236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 36474666 - 36474702
Alignment:
Q  36 gtttaaaatagaaactttgtattgaaacttgtgtatt 72  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  36474666 gtttaaaatagaaattttgtattgaaacttgtatatt 36474702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 27262824 - 27262707
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggac 196  Q
    ||||| ||| ||||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||| |||| |||      
T  27262824 ttgtgtattcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgtttctattttttgaatccttaacaagtgtcctaaggga 27262725  T
Q  197 acttgttaacaggaccca 214  Q
    | ||||||||| ||||||    
T  27262724 atttgttaacaagaccca 27262707  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 49806049 - 49805965
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||||||| |||||||||||| || ||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||||||||    
T  49806049 ttgtgcattcaacacattaaaatataaaaaagtaactttttctacataaaagttataaattgtttctattttttaaatctttaac 49805965  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 50015627 - 50015527
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaac 206  Q
    |||||||| ||| |||||||||||||||||| | || |||| ||||||||||||||||||||||||||  ||||| |||||| | |||||||| ||||||    
T  50015627 aacacattcaaaaatcaaaaagtaactttttatacaaaaaatttatcaattgtttctattttttgaattcttaacaagtatcataaggacactcgttaac 50015528  T
Q  207 a 207  Q
    |    
T  50015527 a 50015527  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 26478075 - 26478138
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttttt 170  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  26478075 aacacattaaaacatcaaaaaataactttttctacataaaaattatcaattgttcctatttttt 26478138  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 25580677 - 25580598
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagta 186  Q
    |||| |||||||||||||||||||  ||||||| ||||  ||||||||||| |||| |||||||||||||||||| ||||    
T  25580677 aacatattaaaacatcaaaaagtagatttttctacatactaattatcaattatttccattttttgaatctttaacaagta 25580598  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 15281371 - 15281446
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    ||||||||| |||||||||||||| |||||  |||||| ||||||||||  |||||||||||||| ||||| ||||    
T  15281371 aaaatataatattttaatttttaaaaagttaaatgcacgatttttaatgcatatatttctataataaattttttaa 15281446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 31635545 - 31635470
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    |||| |||| ||||||| ||||||||||||| |||||| | ||||||| |||||||||| |||||||||| |||||    
T  31635545 aaaacataatattttaacttttaagaagttgaatgcacgacttttaatatgtatatttccataatgaattccttaa 31635470  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 49806109 - 49806035
Alignment:
Q  4 ttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||| ||||| ||||||| ||||||||||||||||||||||| ||| ||||| |||||| ||||| ||| |||||    
T  49806109 ttaataagtgtccttaggacacttgataagaggtttaaaataaaaattttgtcttgaaatttgtgcattcaacac 49806035  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 24980902 - 24980830
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||| ||| |||||||| ||||| ||||||| |||||  ||| ||||||||||||||||||||| |||||||    
T  24980902 ttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatattttt 24980830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 24989660 - 24989588
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||| ||| |||||||| ||||| ||||||| |||||  ||| ||||||||||||||||||||| |||||||    
T  24989660 ttgtgtattcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatattttt 24989588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 2507047 - 2507105
Alignment:
Q  123 aaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||||||| ||||| |  |||||| ||||||||| |||||||||||||||||||||||    
T  2507047 aaaaagtaattttttatatataaaatttatcaattatttctattttttgaatctttaac 2507105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 31262645 - 31262587
Alignment:
Q  233 ttttaagaagttgtatgcacaatttttaatgtg-tatatttctataatgaatttcttaa 290  Q
    ||||||||||||| ||||||||||||| || || |||||||||||||||| ||||||||    
T  31262645 ttttaagaagttgaatgcacaatttttgatatgttatatttctataatgagtttcttaa 31262587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 42479519 - 42479587
Alignment:
Q  111 cattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||||||||| ||||| ||||||||| | ||| ||||||||||||||||| | |||||||||||||||||    
T  42479519 cattaaaacataaaaaaataacttttt-tacatgaaaattatcaattgtttat-ttttttgaatctttaac 42479587  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 52698462 - 52698536
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttttt 170  Q
    |||||| ||| |||||||| ||| | ||||||  |||||||||| ||||||| |||||||||||||| |||||||    
T  52698462 attgtgtattcaacacattgaaataacaaaaaacaactttttctccataaaagttatcaattgtttccatttttt 52698536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 1035673 - 1035572
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagt 313  Q
    |||||||||| ||||||| |||||| |||||| |||||  | |||| || |||||||||||||||||| || ||||| | |||   |||||| |||||||    
T  1035673 aaaaatataatattttaacttttaataagttgaatgcaagacttttgatatgtatatttctataatgagttccttaacatgtgcccttgagggcacaagt 1035574  T
Q  314 ta 315  Q
    ||    
T  1035573 ta 1035572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 8644743 - 8644850
Alignment:
Q  215 aaaatataacattttaatttttaagaagt-------tgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggac 307  Q
    |||||||||||||||||||||||||||||       || |||||  | |||||||||||||||||||||||||| ||| |||| | |||   |||||| |    
T  8644743 aaaatataacattttaatttttaagaagttgaatcatgaatgcatgacttttaatgtgtatatttctataatgagtttattaacatgtgcccttgagggc 8644842  T
Q  308 acaagtta 315  Q
    ||||||||    
T  8644843 acaagtta 8644850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 22167490 - 22167445
Alignment:
Q  22 gcacttgataagaggtttaaaatagaaactttgtattgaaacttgt 67  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||    
T  22167490 gcacatgataagaagtttaaaatagaaactttgtattggaacttgt 22167445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 46028374 - 46028431
Alignment:
Q  106 gaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttct 163  Q
    |||||||||||||||| ||||||||||||| ||| || |||| ||||||||| |||||    
T  46028374 gaacacattaaaacattaaaaagtaactttatctacaaaaaatttatcaattctttct 46028431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 7444887 - 7444959
Alignment:
Q  6 aacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||||||||||||||||||||||||||||  || |||  ||||||||| | |||| | ||||||||| |||||    
T  7444887 aacaagtgcccttagggcacttgataagaaattcaaagaagaaactttatcttgagatttgtgtattcaacac 7444959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 44529287 - 44529347
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaatt 157  Q
    ||||| ||| |||| |||||||||| ||||||||||||||||  ||||||| |||||||||    
T  44529287 ttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatttatcaatt 44529347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 37599712 - 37599669
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttct 139  Q
    |||||||||| |||||||| ||||| ||||||||||||||||||    
T  37599712 attgtgcattcaacacattgaaacagcaaaaagtaactttttct 37599669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 44698061 - 44698124
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtt 160  Q
    ||||| ||| |||| ||| |||||| ||||||||||||||||  ||||||| ||||||||||||    
T  44698061 ttgtgtattcaacatattgaaacattaaaaagtaactttttcaacataaaatttatcaattgtt 44698124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 9682266 - 9682338
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||||||| |||||||||||||| |||||| ||||  ||||| ||| ||| ||||||||| ||| |||||||    
T  9682266 attgtgcattcaacacattaaaacaacaaaaaataacaatttctacat-aaatttatcaattatttttattttt 9682338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 26761308 - 26761235
Alignment:
Q  5 taacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||||| |||| |||||||| |||||||||||||||||||  ||| ||| | || ||| ||||||||| |||||    
T  26761308 taacaaatgcctttagggcatttgataagaggtttaaaatgaaaattttatcttaaaatttgtgtattcaacac 26761235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 44698002 - 44698039
Alignment:
Q  5 taacaagtgcccttagggcacttgataagaggtttaaa 42  Q
    |||||||||||||||||||||||||||| | |||||||    
T  44698002 taacaagtgcccttagggcacttgataataagtttaaa 44698039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 5173071 - 5173135
Alignment:
Q  100 tgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttcta 164  Q
    |||||| |||| |||||||| | |||||||||||||||||  |||||| ||| ||||| ||||||    
T  5173071 tgcattcaacatattaaaacttgaaaaagtaactttttctatataaaacttaccaattctttcta 5173135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 28490555 - 28490630
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    ||||| |||| ||||||| |||| ||||||||  ||||| ||||| | | ||||||||||||||||||||| |||||    
T  28490555 aaaaacataatattttaactttttagaagttgattgcacgattttga-tatgtatatttctataatgaattccttaa 28490630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 32161582 - 32161622
Alignment:
Q  129 taactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||||||||| ||||||| ||||||||| |||||||||||    
T  32161582 taactttttctacataaaatttatcaattatttctattttt 32161622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 47235508 - 47235580
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||| ||| |||| ||| |||||| |||||| |||||| | | ||| ||| |||||||||||||||||||||    
T  47235508 ttgtgtattcaacaaattgaaacattaaaaagcaactttatttacatgaaagttatcaattgtttctattttt 47235580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 107 - 207
Target Start/End: Original strand, 24487775 - 24487875
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaac 206  Q
    |||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||  ||| ||| |||||||||||    
T  24487775 aacatattaaaacatcaaaaattaactttttctacataaaagttatcaattgtttctattttttgaatcattaacaagtgccctaagggcacttgttaac 24487874  T
Q  207 a 207  Q
    |    
T  24487875 a 24487875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 43767320 - 43767402
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatcttta 179  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  43767320 ttgtgcattcaacacattaaaacatcaaaaagtaattttttctacataaaatttatcaattgtttatatttttttaatcttta 43767402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 43767257 - 43767334
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||| ||||| |||||| ||||| ||| |||||    
T  43767257 atgttaacaagtgcccttagggcaattgataagaggtttaaaatgaaaattttgtcttgaaatttgtgcattcaacac 43767334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 53248647 - 53248715
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatc 175  Q
    |||| ||||||| | |||||||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  53248647 aacatattaaaaaaccaaaaagtaactttttatacataaaagttatcaattgtttctattttttgaatc 53248715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 38094344 - 38094423
Alignment:
Q  141 cataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaacaggacccaaaaata 220  Q
    ||||||| ||||||||||||||||||||||||||| ||||  |||  |||||||| ||||||||||| |||||| |||||    
T  38094344 cataaaagttatcaattgtttctattttttgaatccttaataagtgcccttaggatacttgttaacaagacccataaata 38094423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 317
Target Start/End: Complemental strand, 13637994 - 13637892
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagtt 314  Q
    |||| |||||||||||||||||||||| ||| |||||| | |||| ||| |||||||| |||||||| |||||||| | |||  ||||||| || |||||    
T  13637994 aaaacataacattttaatttttaagaatttgaatgcacgaattttgatgcgtatatttttataatgactttcttaacatgtgtaattgagggcataagtt 13637895  T
Q  315 agc 317  Q
    |||    
T  13637894 agc 13637892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 54787855 - 54787931
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    |||||||||||||||||| |||||||| |||| ||| || |||||| || ||||||||| ||||||||||| |||||    
T  54787855 aaaaatataacattttaacttttaagatgttgaatgtacgatttttgatatgtatatttttataatgaattccttaa 54787931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 15985277 - 15985379
Alignment:
Q  101 gcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacactt 200  Q
    ||||| |||||||| ||| || ||||||||| |||||   ||||||| ||||||||| ||||  ||||||||||||||||| ||| |||||||| |||||    
T  15985277 gcattcaacacattgaaatattaaaaagtaatttttttaacataaaatttatcaattatttcc-ttttttgaatctttaaccagtgtccttagggcactt 15985375  T
Q  201 gtta 204  Q
    ||||    
T  15985376 gtta 15985379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 23512820 - 23512736
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    |||||||||| || ||||| ||||| ||||||||||| |||||| ||||||| || |||||| |||||| |||| |||||||||||    
T  23512820 attgtgcattcaagacattgaaacaacaaaaagtaacattttctccataaaatttgtcaattatttcta-ttttggaatctttaac 23512736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 55158498 - 55158584
Alignment:
Q  227 tttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagtta 315  Q
    ||||| |||||||||||||  ||||| ||||  ||| |||||||||||||||| |||||||||| | ||| |||||||| |||||||||    
T  55158498 tttaacttttaagaagttgattgcacgattt--aatatgtatatttctataataaatttcttaacatgtgctattgagggcacaagtta 55158584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 25096385 - 25096311
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    ||||||||||||||||||||| ||||||||| ||| |  |||||| ||| ||||||||||||||||| || |||||    
T  25096385 aaaatataacattttaatttt-aagaagttgaatgtatgattttttatgcgtatatttctataatgagttccttaa 25096311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 43827245 - 43827347
Alignment:
Q  102 cattgaacacattaaaacatc-aaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacactt 200  Q
    ||||||||||||||||||| | ||||||||||||||||  ||||||| | ||||||  ||||||  ||||||||| ||||||||||  |||||  |||||    
T  43827245 cattgaacacattaaaacaacaaaaaagtaactttttcaacataaaattcatcaatcatttcta-gttttgaatcattaactagtactcttagcgcactt 43827343  T
Q  201 gtta 204  Q
    ||||    
T  43827344 gtta 43827347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 37919244 - 37919187
Alignment:
Q  233 ttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    ||||||||||||| ||||||||||||| ||  |||||||| |||||||| ||||||||    
T  37919244 ttttaagaagttgaatgcacaatttttgatacgtatatttatataatgagtttcttaa 37919187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12402299 - 12402375
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaaca 77  Q
    |||||||||||||| | |||| |||||||||| | |||| ||||||||| ||| | ||||| |||||||||| ||||    
T  12402299 atgttaacaagtgctcataggacacttgataataagttttaaatagaaattttttcttgaaccttgtgtatttaaca 12402375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 31732155 - 31732071
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||| ||| |||| ||| ||||||||||||| |||||||||  ||| ||| |||| |||| |||| |||||||||||| |||||    
T  31732155 ttgtgtattcaacatattgaaacatcaaaaagcaactttttcaacatgaaagttatgaattatttccattttttgaatccttaac 31732071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 16897534 - 16897569
Alignment:
Q  146 aaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||||| ||||||||||||||||||||||||||||    
T  16897534 aaattattaattgtttctattttttgaatctttaac 16897569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24487702 - 24487761
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattga 60  Q
    |||||||||||| |||||| || |||||||||||| |||||||| |||| ||||| ||||    
T  24487702 atgttaacaagtacccttaaggaacttgataagagttttaaaatggaaattttgtcttga 24487761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 42461372 - 42461305
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaat 174  Q
    |||||||| ||||||  |||||||| ||||| | ||||||| |||||||||||||| | |||||||||    
T  42461372 aacacattgaaacatataaaagtaattttttttacataaaagttatcaattgtttccaatttttgaat 42461305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 47006700 - 47006637
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataa 278  Q
    |||| |||||||||||| ||||||||||||| |||||| | |||| ||| | ||||||||||||    
T  47006700 aaaacataacattttaaattttaagaagttgaatgcacgacttttgatgcgaatatttctataa 47006637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 47499429 - 47499504
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    ||||||||| || | || |||||| |||||| || ||||| |||||||  |||||||| |||||||||||||||||    
T  47499429 aaaatataatatatgaacttttaaaaagttgaattcacaacttttaatacgtatatttttataatgaatttcttaa 47499504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 50037278 - 50037192
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttct-gcataaaaattatcaattgtttctattttttgaatctttaacta 183  Q
    ||||| ||| ||||||||||||||| ||||| ||| ||||| |  ||||||| ||||||||| ||||  |||||||||||||||||||    
T  50037278 ttgtgtattcaacacattaaaacattaaaaaataattttttttaacataaaatttatcaattatttc-cttttttgaatctttaacta 50037192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 50173414 - 50173495
Alignment:
Q  122 caaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgtta 204  Q
    ||||||| |||| ||||  ||||||| ||| ||||||||||  ||||||||||| ||||||||| |||| ||| |||||||||    
T  50173414 caaaaagcaactctttcaacataaaatttagcaattgtttcc-ttttttgaatccttaactagtgtcctaagggcacttgtta 50173495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 36473196 - 36473127
Alignment:
Q  100 tgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||| || ||||| ||| || |||||||||| |||||| ||||||| |||| |||| |||||||||||    
T  36473196 tgcattcaagacattgaaagattaaaaagtaacattttctacataaaatttataaattatttctattttt 36473127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 48192642 - 48192699
Alignment:
Q  233 ttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    ||||||||||||| |||| | |||||||||  ||||||||||||||| | ||||||||    
T  48192642 ttttaagaagttgaatgcgcgatttttaataagtatatttctataataagtttcttaa 48192699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15496280 - 15496228
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaacttt 53  Q
    ||||||||||||||||||| ||| ||||||||||  |||||| ||| ||||||    
T  15496280 atgttaacaagtgcccttatggcccttgataagaaatttaaagtaggaacttt 15496228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 51325532 - 51325604
Alignment:
Q  218 atataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    |||||||||||||||||||||||||||  || ||| | |||| |||  ||||||| |||||||| ||| ||||    
T  51325532 atataacattttaatttttaagaagtttaatacacgacttttgatgaatatatttttataatgagttttttaa 51325604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 342988 - 343094
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaac 206  Q
    |||||||| |||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | | |||| ||| | |||||||||    
T  342988 aacacattgaaacattaaaaaataactttttatgcataaaagttatcaattgtttctattttttgaatctttaacaaatgtcctaagggctcttgttaac 343087  T
Q  207 aggaccc 213  Q
    | |||||    
T  343088 aagaccc 343094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 31597603 - 31597487
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggac 196  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||| |||||||| |||||||| |||| ||||| ||| | |||||  |    
T  31597603 ttgtgcattcaacacattaaaacattaaaaagtaactttttctacataaaagttataaattgtttttattttttaaatccttaacaagtgttcttagagc 31597504  T
Q  197 acttgttaacaggaccc 213  Q
    | ||||||||| |||||    
T  31597503 atttgttaacaagaccc 31597487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 2801315 - 2801390
Alignment:
Q  107 aacacattaaaacatcaaaaagtaacttttt-ctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||    
T  2801315 aacacattaaaacattaaaaagtaacttttttctacataaaagttatcaattgtttctattttttgaatcattaac 2801390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 2817277 - 2817352
Alignment:
Q  107 aacacattaaaacatcaaaaagtaact-ttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||| ||||||||||||||||||||| |||| | ||||||| ||||||| |||||||||||||| |||| |||||    
T  2817277 aacacgttaaaacatcaaaaagtaactattttttacataaaagttatcaactgtttctattttttaaatccttaac 2817352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 29286074 - 29286007
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||||||||| ||||||| ||||||||||||| |||||| |||||| ||  |||||||||||||||||    
T  29286074 aaaaatataatattttaaattttaagaagttgaatgcacgattttttatacgtatatttctataatga 29286007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 2248742 - 2248839
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttagg 194  Q
    ||||| ||| |||||||| |||||| ||||||||||||||||  ||| ||| |||||| |||||||  ||||||||||| ||||| |||  |||||||    
T  2248742 ttgtgtattcaacacattgaaacattaaaaagtaactttttcaacatcaaacttatcatttgtttcctttttttgaatccttaacaagttcccttagg 2248839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24396916 - 24396868
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaa 49  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  24396916 atgttaacaagtgcccttagggcacttgataaaaagttgaaaatagaaa 24396868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 8504573 - 8504506
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||||||||| ||||||||||||||||| ||| |||||||| ||||||| | ||| |||| |||||||    
T  8504573 aaaaatataatattttaatttttaagaaattgaatgcacaacttttaatatatatgtttcgataatga 8504506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 9049969 - 9050031
Alignment:
Q  16 cttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    ||||||||||||||||| | |||||||||||||| ||| | |||||| ||||||||| |||||    
T  9049969 cttagggcacttgataaaaagtttaaaatagaaagtttattttgaaagttgtgtattcaacac 9050031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 6469619 - 6469682
Alignment:
Q  227 tttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    |||||||||||||||||||  ||||| | |||||||   ||||||||||||||||||| |||||    
T  6469619 tttaatttttaagaagttgactgcacgacttttaataaatatatttctataatgaattccttaa 6469682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 2831462 - 2831425
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcac 252  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  2831462 aaaacataacattttaatttttaagaagttgaatgcac 2831425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 6420368 - 6420339
Alignment:
Q  5 taacaagtgcccttagggcacttgataaga 34  Q
    ||||||||||||||||||||||||||||||    
T  6420368 taacaagtgcccttagggcacttgataaga 6420339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 30623473 - 30623436
Alignment:
Q  30 taagaggtttaaaatagaaactttgtattgaaacttgt 67  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  30623473 taagaagtttaaaatagaaattttgtattgaaacttgt 30623436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 31597650 - 31597589
Alignment:
Q  17 ttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||||| |||||||||||| |||||||| |||| ||||| |||||| ||||| ||| |||||    
T  31597650 ttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacac 31597589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2817208 - 2817252
Alignment:
Q  5 taacaagtgcccttagggcacttgataagaggtttaaaatagaaa 49  Q
    |||||| | ||||||  ||||||||||||||||||||||||||||    
T  2817208 taacaaatacccttatagcacttgataagaggtttaaaatagaaa 2817252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 30326704 - 30326776
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||| ||| |||||||| |||||||||| |  |||||||||| ||| ||| |||||||||||| | ||||||    
T  30326704 ttgtgtattcaacacattgaaacatcaaagaacaactttttctacatgaaagttatcaattgttcccattttt 30326776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 10409780 - 10409706
Alignment:
Q  4 ttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  10409780 ttaacaagtgcccttaagacacttgataagaggtttaaaatagaaactttatcttgaaacttgtgtatttaacac 10409706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 7859201 - 7859087
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggac 196  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||  |||||||  |||||||||||| | |||||| |||||||||| | |||| | |||||    
T  7859201 ttgtgtattcaacacattaaaacattaaaaagtaactttttcaacataaaatatatcaattgttt-tcttttttaaatctttaacaaatatcttaaggac 7859103  T
Q  197 acttgttaacaggacc 212  Q
    ||||||||||| ||||    
T  7859102 acttgttaacaagacc 7859087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 39900343 - 39900242
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggac 196  Q
    |||| |||| ||||||||||||||||||||||||| |||||   ||||||| ||||||||| ||||||||||||||||| ||||| | | | ||||||||    
T  39900343 ttgtacattcaacacattaaaacatcaaaaagtaatttttta--cataaaagttatcaattatttctattttttgaatccttaacaaatgtacttaggac 39900246  T
Q  197 actt 200  Q
    ||||    
T  39900245 actt 39900242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 8867286 - 8867220
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||| |||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||    
T  8867286 aaaacataacattttaatttttaagaagttgaatgcacaacttttgatgcgtatatttctataatga 8867220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32615803 - 32615880
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||| ||| | ||| || | ||||||| |||||    
T  32615803 atgttaacaagtgcccttagggcacttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacac 32615880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 39491668 - 39491744
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    ||||| |||||||||||||||| ||||||||| |||||| | || |  |||||||||||||||||||| ||||||||    
T  39491668 aaaaacataacattttaattttaaagaagttgaatgcacgacttctgttgtgtatatttctataatgagtttcttaa 39491744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 10409720 - 10409616
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggac 196  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||            |||||||||| ||||||| |||| |||| ||||  |||||||||    
T  10409720 ttgtgtatttaacacattaaaacatcaaaaagtaactttttctg------------caattgtttccatttttttaatccttaattagtgcccttaggac 10409633  T
Q  197 acttgttaacaggaccc 213  Q
    ||||||||||| |||||    
T  10409632 acttgttaacatgaccc 10409616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13521850 - 13521779
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtatt 72  Q
    |||||||||||||| |||||||||| |||||||| ||||||| |||||| ||| | |||||| |||||||||    
T  13521850 atgttaacaagtgctcttagggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtatt 13521779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13611385 - 13611314
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtatt 72  Q
    |||||||||||||| |||||||||| |||||||| ||||||| |||||| ||| | |||||| |||||||||    
T  13611385 atgttaacaagtgctcttagggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtatt 13611314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 32615876 - 32615982
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaac 206  Q
    |||||||| |||||| |||||  |||||| | | ||| ||| |||||||||||||||| |||||| ||||||||| |||| ||| ||| |||||||||||    
T  32615876 aacacattgaaacattaaaaaacaactttatttacatgaaagttatcaattgtttcta-tttttggatctttaacaagtaccctaagggcacttgttaac 32615974  T
Q  207 aggaccca 214  Q
    | ||||||    
T  32615975 aagaccca 32615982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 42964813 - 42964887
Alignment:
Q  95 gattgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||||| ||| |||||||| |||||||||||| ||||||||||| ||| ||| ||||||||| |||| ||||||    
T  42964813 gattgtgtattcaacacattgaaacatcaaaaaataactttttctacatgaaagttatcaattatttccattttt 42964887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 41602510 - 41602401
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagt 313  Q
    |||||||||||| ||||| |||||||||  || || ||| |||||| ||| |||||||||||||||||||| ||||| | |||   |||||  |||||||    
T  41602510 aaaaatataacaatttaaattttaagaatatgaatacacgattttttatgcgtatatttctataatgaattccttaacatgtgccgttgagagcacaagt 41602411  T
Q  314 tagcgtttac 323  Q
    |||| |||||    
T  41602410 tagcatttac 41602401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 43471367 - 43471436
Alignment:
Q  111 cattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaa 180  Q
    |||||||||||||||||  || ||||| | ||||||||||||||||| |||  |||||||||||||||||    
T  43471367 cattaaaacatcaaaaaacaattttttatacataaaaattatcaattatttacattttttgaatctttaa 43471436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 17922228 - 17922291
Alignment:
Q  150 tatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaacaggaccc 213  Q
    |||||||||||||||||| ||||||  ||||| |||  |||||||||||||||||||| |||||    
T  17922228 tatcaattgtttctatttcttgaattcttaacaagtgcccttaggacacttgttaacaagaccc 17922291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 29912108 - 29912177
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtatt 72  Q
    |||||||||||||||||  ||||||||||||||| ||||||| |||||| ||| | || ||| |||||||||    
T  29912108 atgttaacaagtgccct--gggcacttgataagaagtttaaagtagaaattttatcttaaaatttgtgtatt 29912177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 36967101 - 36967137
Alignment:
Q  30 taagaggtttaaaatagaaactttgtattgaaacttg 66  Q
    ||||| |||||||||||||||||||||||||||||||    
T  36967101 taagaagtttaaaatagaaactttgtattgaaacttg 36967137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 36178479 - 36178550
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattt 167  Q
    |||||||||| || ||||| ||||| |||||| ||  ||||||||||||||| |||||||||  ||||||||    
T  36178479 attgtgcattcaagacattgaaacaacaaaaaatatttttttctgcataaaatttatcaattacttctattt 36178550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 7774700 - 7774634
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||| ||||||||||||| |||||||||||| |||||| | |||| ||   ||||||||||||||||    
T  7774700 aaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatga 7774634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 7791347 - 7791281
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||| ||||||||||||| |||||||||||| |||||| | |||| ||   ||||||||||||||||    
T  7791347 aaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatga 7791281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 7811931 - 7811865
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||| ||||||||||||| |||||||||||| |||||| | |||| ||   ||||||||||||||||    
T  7811931 aaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatga 7811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 31331421 - 31331351
Alignment:
Q  116 aaacatcaaaaagtaactttttctgcataaaaattatcaattgtttcta-ttttttgaatctttaactagt 185  Q
    |||||| |||||| |||||||| |  || ||||||||||||||||| || ||||||||||| |||||||||    
T  31331421 aaacataaaaaagcaactttttatatatgaaaattatcaattgtttttatttttttgaatcattaactagt 31331351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 9580140 - 9580177
Alignment:
Q  30 taagaggtttaaaatagaaactttgtattgaaacttgt 67  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  9580140 taagaagtttaaaatagaaattttgtattgaaacttgt 9580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12189611 - 12189656
Alignment:
Q  22 gcacttgataagaggtttaaaatagaaactttgtattgaaacttgt 67  Q
    |||| |||||||| |||||||||||||||||| ||||| |||||||    
T  12189611 gcacatgataagaagtttaaaatagaaactttatattggaacttgt 12189656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12434039 - 12434084
Alignment:
Q  22 gcacttgataagaggtttaaaatagaaactttgtattgaaacttgt 67  Q
    |||| |||||||| |||||||||||||||||| ||||| |||||||    
T  12434039 gcacatgataagaagtttaaaatagaaactttatattggaacttgt 12434084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 13244724 - 13244796
Alignment:
Q  120 atcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttag 193  Q
    ||||||||  || ||| ||| ||||||| |||||||||||||||| |||||||||| ||||| |||||| ||||    
T  13244724 atcaaaaaacaattttgtctacataaaagttatcaattgtttcta-tttttgaatcattaacaagtatctttag 13244796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 29107275 - 29107336
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttt 168  Q
    |||||||||||| ||||||||||||||||||    || ||||||||| ||| ||||||||||    
T  29107275 aacacattaaaatatcaaaaagtaactttttacctattaaaattatctattatttctatttt 29107336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 41235889 - 41235836
Alignment:
Q  116 aaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||||||||||  |||||||||| ||| ||| |||||||||||||| ||||||    
T  41235889 aaacatcaaaaaacaactttttctacatgaaatttatcaattgtttccattttt 41235836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 34085350 - 34085421
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||| ||| |||||||| || |||||||||||||| || ||| ||| ||| ||||||||| |||||||||||    
T  34085350 ttgtgtattcaacacattgaatcatcaaaaagtaac-ttatctccatgaaagttatcaattatttctattttt 34085421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 37626971 - 37627051
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctt 177  Q
    ||||| ||| |||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  37626971 ttgtgtattcaacacatttaaacattaaaaagtaactttttctacataaaagttatcaattgtttctattttttaaatctt 37627051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 5497795 - 5497891
Alignment:
Q  116 aaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaacaggaccca 214  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||| ||||| |||||| ||||| ||   | || ||||||||||||||| ||||||    
T  5497795 aaacatcaaaaagtaactttttctacataaaagttatcaactgtttccattttctgaatccttaacgag--ccgttgggacacttgttaacaagaccca 5497891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 48051710 - 48051776
Alignment:
Q  103 attgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||| ||||| ||||| |||||||||||||||||| ||||||| ||||||||| |||||||||||    
T  48051710 attgaagacattgaaacaacaaaaagtaactttttctacataaaatttatcaattatttctattttt 48051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 564168 - 564232
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataat 279  Q
    |||| ||||||||||||||||||||||||   ||||||||||||||||  |||||||||||||||    
T  564168 aaaacataacattttaatttttaagaagtcaaatgcacaatttttaatacgtatatttctataat 564232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 23568060 - 23567952
Alignment:
Q  110 acattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaacagg 209  Q
    ||||| ||| ||||||||||||| ||||||  |||||| ||||||||| ||| |||||| |||||  ||||  | ||||||||| ||||||||||||| |    
T  23568060 acattgaaaaatcaaaaagtaacattttctatataaaagttatcaattatttttattttgtgaattcttaataaatatccttagaacacttgttaacaag 23567961  T
Q  210 acccaaaaa 218  Q
    |||| ||||    
T  23567960 accctaaaa 23567952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 39260095 - 39260036
Alignment:
Q  221 taacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatg 280  Q
    ||||||||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||    
T  39260095 taacattttaatttttaagaagttgaatgcacaactttttatgcgtatatttttataatg 39260036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 4068359 - 4068440
Alignment:
Q  122 caaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgtta 204  Q
    |||||||||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||||  ||| ||| |||||||||    
T  4068359 caaaaagtaactttttctacatagaatttaacaattgtttct-ttttttgaatccttaactagtgccctaagggcacttgtta 4068440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 24744052 - 24743986
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||| |||||||||||||||| ||||||||| ||| || | |||||||| |||||||||||||||||    
T  24744052 aaaacataacattttaattttaaagaagttgaatgtacgacttttaatgcgtatatttctataatga 24743986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 36989919 - 36989837
Alignment:
Q  233 ttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagtta 315  Q
    ||||||||||||| |||||| | ||||||| ||||||||| |||||||| |||||||| | |||   ||||||||||||||||    
T  36989919 ttttaagaagttgaatgcacgacttttaatatgtatatttttataatgagtttcttaatatgtgcccttgaggacacaagtta 36989837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 17409979 - 17409934
Alignment:
Q  22 gcacttgataagaggtttaaaatagaaactttgtattgaaacttgt 67  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||    
T  17409979 gcacatgataagaagtttaaaatagaaactttgtattggaacttgt 17409934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 22478035 - 22478108
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||| ||| |||||||| ||| | ||||||  |||||||||| ||||||| |||||||||||||| ||||||    
T  22478035 attgtgtattcaacacattgaaataacaaaaaccaactttttctccataaaagttatcaattgtttccattttt 22478108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 46695650 - 46695707
Alignment:
Q  112 attaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||||||||||||| ||| ||||| | ||||||||||||| ||| |||||||||||    
T  46695650 attaaaacatcaaaaaataattttttatacataaaaattatcgattatttctattttt 46695707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 54639763 - 54639699
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgttt 161  Q
    ||||| |||||||| ||| ||||||||||||| |||||||||| ||| |||  ||||||||||||    
T  54639763 ttgtgtattgaacaaattgaaacatcaaaaagcaactttttctacatgaaagctatcaattgttt 54639699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23568136 - 23568065
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtatt 72  Q
    ||||||||||||| |||  ||||||||||||||| |||| |||| |||||||| | |||||| |||| ||||    
T  23568136 atgttaacaagtgtcctaggggcacttgataagaagttttaaatggaaactttatcttgaaatttgtatatt 23568065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26009823 - 26009752
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtatt 72  Q
    ||||||||||||||||||| | ||||||||||||  |||||| || ||||||| | ||| || |||||||||    
T  26009823 atgttaacaagtgcccttaagacacttgataagaaatttaaagtaaaaactttatcttggaatttgtgtatt 26009752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 56128670 - 56128627
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttct 139  Q
    |||||||||| |||||||| ||||| ||||||||||||||||||    
T  56128670 attgtgcattcaacacattgaaacaacaaaaagtaactttttct 56128627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 3775380 - 3775434
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgttt 161  Q
    |||||||| ||||||||||||  ||| |||||| |||||||| ||||||||||||    
T  3775380 aacacattgaaacatcaaaaaacaacattttctacataaaaactatcaattgttt 3775434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 20032588 - 20032641
Alignment:
Q  116 aaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttttt 170  Q
    |||||| ||||||||| ||||| | ||||||| ||||||||||||||||||||||    
T  20032588 aaacattaaaaagtaatttttt-tacataaaagttatcaattgtttctatttttt 20032641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 27301783 - 27301730
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgttt 161  Q
    ||||||||||||||||||||| ||| |||||||  |||||||||||| |||||||    
T  27301783 aacacattaaaacatcaaaaa-taattttttctatataaaaattatcgattgttt 27301730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 45249947 - 45250021
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttctta 289  Q
    |||| |||| ||||||| ||||||||||||| |||||| | |||| || || ||||||||||||  |||||||||    
T  45249947 aaaacataatattttaaattttaagaagttgaatgcacgacttttgatatgaatatttctataaaaaatttctta 45250021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 18915583 - 18915636
Alignment:
Q  115 aaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttt 168  Q
    |||||||||||||  || ||||| | |||||||||||||||||||||| |||||    
T  18915583 aaaacatcaaaaaacaattttttttacataaaaattatcaattgtttccatttt 18915636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 19468341 - 19468304
Alignment:
Q  30 taagaggtttaaaatagaaactttgtattgaaacttgt 67  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  19468341 taagaagtttaaaatagaaattttgtattgaaacttgt 19468304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 34701290 - 34701217
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||| |||| |||| ||||||||| ||||| |||||||||||| ||||||| | ||||||  |||||| ||||    
T  34701290 attgtacattcaacaaattaaaacaacaaaaggtaactttttctacataaaactcatcaatcatttctaatttt 34701217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 11123493 - 11123615
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggac 196  Q
    ||||| ||| |||| ||||||||||||||||  ||  |||||| |||| ||||||| ||||||||| |  |||| |||||||||  ||| |  |||||||    
T  11123493 ttgtgtattcaacatattaaaacatcaaaaatcaatcttttctacatagaaattattaattgtttcca--ttttaaatctttaataagtgtatttaggac 11123590  T
Q  197 acttgttaacaggacccaaaaatataa 223  Q
    | |||||||||  | ||||||||||||    
T  11123591 atttgttaaca--aaccaaaaatataa 11123615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 38788767 - 38788850
Alignment:
Q  111 cattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttagg 194  Q
    ||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||| ||||| |||  |||||||    
T  38788767 cattaaaacatcaaaaagtaactttttctacatgaaagttgtcaattgtttctattttttgaatccttaacaagtgcccttagg 38788850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 1944770 - 1944854
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||| ||| || ||||| |||||| ||||||||| |||||||| |||||| ||||||||||||| ||||||| |||||||||||    
T  1944770 ttgtgtattcaatacattgaaacattaaaaagtaattttttctgtataaaagttatcaattgtttatatttttggaatctttaac 1944854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 41890043 - 41890119
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaa 291  Q
    |||| |||||||||||||||||||||||||| |||||| | |||| ||| ||||||||||||||| | |||||||||    
T  41890043 aaaacataacattttaatttttaagaagttgaatgcacgacttttgatgcgtatatttctataataagtttcttaaa 41890119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 19204418 - 19204481
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttttt 170  Q
    |||||||| |||||| ||||| ||||||||||  ||||||||||||||||||||| ||||||||    
T  19204418 aacacattgaaacataaaaaaataactttttcaacataaaaattatcaattgtttttatttttt 19204481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 26489327 - 26489398
Alignment:
Q  142 ataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaacaggaccc 213  Q
    |||||| ||||||||| ||||||||||||||||| ||||| | |   ||||||||||||||||||| |||||    
T  26489327 ataaaagttatcaattatttctattttttgaatcattaacaaatgcacttaggacacttgttaacaagaccc 26489398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38788712 - 38788754
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaa 43  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  38788712 atgttaacaagtgcccttaaggcacttgataaaaggtttaaaa 38788754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 11074642 - 11074569
Alignment:
Q  5 taacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||| ||| | |||  | ||||||||| |||||    
T  11074642 taacaagtgcccttagagcacttgataagaagtttaaagtagaaattttttcttgggatttgtgtattcaacac 11074569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 36285070 - 36285005
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataat 279  Q
    ||||| |||| ||||||| ||||||||||||| ||| |||| ||||||| ||||||||| ||||||    
T  36285070 aaaaaaataatattttaacttttaagaagttgaatgtacaacttttaatatgtatatttttataat 36285005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 11074583 - 11074511
Alignment:
Q  97 ttgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    ||||| ||| |||||||| |||||| |||||| ||||||||||||||  || ||||| |||||||| ||||||    
T  11074583 ttgtgtattcaacacattgaaacataaaaaagcaactttttctgcatggaagttatctattgtttccattttt 11074511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11069757 - 11069706
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactt 52  Q
    |||||||||||||   |||||||||||||||||| ||||||||| |||||||    
T  11069757 atgttaacaagtgtttttagggcacttgataagaagtttaaaatggaaactt 11069706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 39420250 - 39420325
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    |||| |||| ||||||| ||| ||||||||| |||||| |  |||||| |||||||||||||||||| || |||||    
T  39420250 aaaacataatattttaactttcaagaagttgaatgcacgacatttaatatgtatatttctataatgagttccttaa 39420325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 16011868 - 16011806
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||||||||| |||||||| ||| ||||| | ||||||| ||||||||| ||| |||||||    
T  16011868 aacacattaaaaaatcaaaaaataattttttttacataaaagttatcaattatttatattttt 16011806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 37744064 - 37744122
Alignment:
Q  112 attaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttttt 170  Q
    ||||||||||||||| |||| ||| | | ||||||||||||||||  ||||||||||||    
T  37744064 attaaaacatcaaaaggtaattttgtttacataaaaattatcaatcatttctatttttt 37744122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 25626319 - 25626408
Alignment:
Q  228 ttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagttagc 317  Q
    |||| ||||||||||||| ||| || | |||| ||  ||||||||||||||| | || ||||| | ||| |||||||| |||||||||||    
T  25626319 ttaacttttaagaagttgaatgtacgacttttgatacgtatatttctataataagttccttaacatgtgttattgagggcacaagttagc 25626408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 17910971 - 17910924
Alignment:
Q  133 tttttctgcataaaaattatcaattgtttctattttttgaatctttaac 181  Q
    ||||||| || ||||||||||||||||||||| |||| |||||||||||    
T  17910971 tttttctacacaaaaattatcaattgtttcta-ttttagaatctttaac 17910924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 20061130 - 20061178
Alignment:
Q  233 ttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    ||||||||||||| |||||||| |||| ||  |||||||||||||||||    
T  20061130 ttttaagaagttgaatgcacaacttttgatacgtatatttctataatga 20061178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 20150437 - 20150489
Alignment:
Q  110 acattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttc 162  Q
    ||||||||| || ||||||||||| ||||  ||||||| ||||||||||||||    
T  20150437 acattaaaatattaaaaagtaactatttcaacataaaatttatcaattgtttc 20150489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 26081030 - 26081132
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagtt 314  Q
    |||| |||| ||||||| |||||||||||||   |||||||||||||| |||||||||||||||||| || ||||| | |||  ||||||||||||||||    
T  26081030 aaaacataatattttaacttttaagaagttgacggcacaatttttaatatgtatatttctataatgagttccttaatatgtgccattgaggacacaagtt 26081129  T
Q  315 agc 317  Q
    |||    
T  26081130 agc 26081132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 26104817 - 26104919
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagtt 314  Q
    |||| |||| ||||||| |||||||||||||   |||||||||||||| |||||||||||||||||| || ||||| | |||  ||||||||||||||||    
T  26104817 aaaacataatattttaacttttaagaagttgacggcacaatttttaatatgtatatttctataatgagttccttaatatgtgccattgaggacacaagtt 26104916  T
Q  315 agc 317  Q
    |||    
T  26104917 agc 26104919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 47188459 - 47188521
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  47188459 aacacattaaaatatcaaaaagtaactttttctacataaaagttattaattgtttctattttt 47188521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 28084831 - 28084938
Alignment:
Q  96 attgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttagga 195  Q
    |||||||||| || ||||||||||| |||||| ||| ||||||| | ||||| ||||||||| ||| || ||||||||| |||||| | | ||||||  |    
T  28084831 attgtgcatttaagacattaaaacaacaaaaaataattttttctacctaaaatttatcaattatttata-tttttgaatttttaacaaatgtccttataa 28084929  T
Q  196 cacttgtta 204  Q
    |||||||||    
T  28084930 cacttgtta 28084938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 11663084 - 11663013
Alignment:
Q  98 tgtgcattgaacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttt 169  Q
    |||| ||| |||||||| ||||||| ||||| ||| |||||| ||| ||| |||||||||||||||||||||    
T  11663084 tgtgtatttaacacattgaaacatcgaaaagcaacgttttctacatgaaagttatcaattgtttctattttt 11663013  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 30424883 - 30424946
Alignment:
Q  107 aacacattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctatttttt 170  Q
    |||||||| ||||||||||||| |||||||||| ||| ||| ||| |||||||||| |||||||    
T  30424883 aacacattgaaacatcaaaaagaaactttttctacatgaaagttagcaattgtttccatttttt 30424946  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 8903036 - 8903100
Alignment:
Q  142 ataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaaca 207  Q
    |||||| ||||||||||||| |||||| |||||||||||| ||| |||| |||||||| |||||||    
T  8903036 ataaaagttatcaattgtttttatttt-tgaatctttaacaagtgtcctaaggacactcgttaaca 8903100  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 38140391 - 38140327
Alignment:
Q  120 atcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagt 185  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||  || ||||||||||||||||||    
T  38140391 atcaaaaagtaacattttctacataaaatttaacaattgtttc-cttctttgaatctttaactagt 38140327  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 28337309 - 28337233
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaa 290  Q
    |||||||||  ||||||| |||||||||||||  ||||| |||||| ||   |||||||||||||||| ||||||||    
T  28337309 aaaaatatagtattttaacttttaagaagttgattgcacgattttttatacatatatttctataatgagtttcttaa 28337233  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 27075033 - 27075100
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||||||||| ||||||| |||||| |||||| ||  |||||||||||| ||||||||| | ||||||    
T  27075033 aaaaatataatattttaacttttaaaaagttgaatatacaatttttaatatgtatatttttttaatga 27075100  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 27203280 - 27203213
Alignment:
Q  214 aaaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||||||||| ||||||| |||||| |||||| ||  |||||||||||| ||||||||| | ||||||    
T  27203280 aaaaatataatattttaacttttaaaaagttgaatatacaatttttaatatgtatatttttttaatga 27203213  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 32711766 - 32711692
Alignment:
Q  130 aactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggacacttgttaa 205  Q
    |||||||| |||||||||||||||| ||||||| | ||||| |||||||||| | |||  ||||||||||| ||||    
T  32711766 aactttttatgcataaaaattatcacttgtttcca-tttttaaatctttaacaaatatatttaggacactttttaa 32711692  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 12837970 - 12837885
Alignment:
Q  110 acattaaaacatcaaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagtatccttaggac 196  Q
    ||||| |||||| |||||| |||||  ||| ||||||| |||||||||||||||| || ||||||| ||||| ||| |||| |||||    
T  12837970 acattgaaacattaaaaagcaacttaatctacataaaatttatcaattgtttcta-ttcttgaatccttaacaagtgtcctaaggac 12837885  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 30824949 - 30825010
Alignment:
Q  123 aaaaagtaactttttctgcataaaaattatcaattgtttctattttttgaatctttaactagt 185  Q
    ||||||||||||| ||||||||||| || | |||| |||||| | ||||||||||||||||||    
T  30824949 aaaaagtaactttatctgcataaaacttgtaaattatttcta-tatttgaatctttaactagt 30825010  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 317
Target Start/End: Complemental strand, 32786894 - 32786792
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagtt 314  Q
    |||| |||| ||||||| ||||||||||||| |||||| | |||| ||  |||||||| |||||||| || ||||| | |||   |||||| ||||||||    
T  32786894 aaaacataatattttaacttttaagaagttgaatgcacgacttttgatacgtatatttatataatgagttccttaacatgtgcccttgagggcacaagtt 32786795  T
Q  315 agc 317  Q
    |||    
T  32786794 agc 32786792  T

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Target: scaffold0542 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 4604 - 4517
Alignment:
Q  230 aatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatgaatttcttaaaacgtgatattgaggacacaagttagc 317  Q
    |||||||||||||||| ||||||   |||| || |||||||||||||||||| | |||||| | |||   |||||| |||||||||||    
T  4604 aatttttaagaagttgaatgcacgcattttgatatgtatatttctataatgagtatcttaacatgtgtccttgagggcacaagttagc 4517  T

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Target: scaffold0482 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 566 - 632
Alignment:
Q  215 aaaatataacattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataatga 281  Q
    |||| ||||||||||||| |||||||||||| |||||| | |||| ||   ||||||||||||||||    
T  566 aaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatga 632  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29836 - 29759
Alignment:
Q  1 atgttaacaagtgcccttagggcacttgataagaggtttaaaatagaaactttgtattgaaacttgtgtattgaacac 78  Q
    ||||||| |||||||||||||||||||||||| | ||| ||| |||||| ||| | ||| || | ||||||| |||||    
T  29836 atgttaataagtgcccttagggcacttgataaaaagttgaaagtagaaattttatcttggaattcgtgtattcaacac 29759  T

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Target: scaffold0328 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 12503 - 12447
Alignment:
Q  223 acattttaatttttaagaagttgtatgcacaatttttaatgtgtatatttctataat 279  Q
    |||||||| |||||||||||||| |||||||| |||| ||  |||||||| ||||||    
T  12503 acattttagtttttaagaagttgaatgcacaacttttgatacgtatatttttataat 12447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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