View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_low_15 (Length: 341)
Name: NF13149_low_15
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 32253498 - 32253833
Alignment:
| Q |
1 |
tcttgggtctcgctctctttcttcttgactatgttctcgtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattct |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253498 |
tcttgggtcccgctctctttcttcttgactatgttctcgtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattct |
32253597 |
T |
|
| Q |
101 |
tcatcttcttgctgccactcaggactgatgatgctgagaccgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253598 |
tcatcttcttgctgccactcaggactgatgatgctgagaccgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctg |
32253697 |
T |
|
| Q |
201 |
tatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaaaccactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253698 |
tatcctgatccgtgttgagagcctgcgctaaaaactctgagctgaaaccactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttg |
32253797 |
T |
|
| Q |
301 |
gtggtgtcctcctctacgtccggggaaactgggcct |
336 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
32253798 |
gtggcgtcctcctctacgtccggggaaactgggcct |
32253833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 39 - 336
Target Start/End: Original strand, 32248750 - 32249047
Alignment:
| Q |
39 |
gtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgag |
138 |
Q |
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||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32248750 |
gtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgag |
32248849 |
T |
|
| Q |
139 |
accgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32248850 |
accgccctctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactct |
32248949 |
T |
|
| Q |
239 |
gagctgaaaccactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcct |
336 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32248950 |
gagctgaaaccactcagcacactgctaccttcgttttgttcctcagatccctcctcttgttgttggcgtcctcctctacgtccggggaaactgggcct |
32249047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 39 - 336
Target Start/End: Original strand, 32243012 - 32243309
Alignment:
| Q |
39 |
gtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgag |
138 |
Q |
| |
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||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32243012 |
gtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgag |
32243111 |
T |
|
| Q |
139 |
accgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32243112 |
accgccctctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactct |
32243211 |
T |
|
| Q |
239 |
gagctgaaaccactcagcacgctgctaccttcattttgttcctcagatccctcctcttgttggtggtgtcctcctctacgtccggggaaactgggcct |
336 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32243212 |
gagctgaaaccactcagcacactgctaccttcgttttgttcctcagatcccttctcttgttgttggcgtcctcctctacgtccggggaaactgggcct |
32243309 |
T |
|
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