View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_low_20 (Length: 239)
Name: NF13149_low_20
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 15052345 - 15052142
Alignment:
| Q |
17 |
aatatcactgtctttagcatgaaaattattttgaaaagagatcgtagattggataagtgtagatggacaccaaaattcatgataaaaatacaaatattga |
116 |
Q |
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| T |
15052345 |
aatatcactgtctttagcatgaaaattattttgaaaagagatcgtagattggataaatgtagatggacaccaaaattcatgataaaaatacaaatattga |
15052246 |
T |
|
| Q |
117 |
cttacagacccatcatcttctctaggaagagacaagattaggttattataatgatggattaccttgttttcttcgctaattgtttcttgtccatcccttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15052245 |
cttacagacccatcatcttctctaggaagagacaagattaggttattataatcatggattaccttgttttcttcgctaattttttcttgtccatcccttg |
15052146 |
T |
|
| Q |
217 |
attg |
220 |
Q |
| |
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|||| |
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| T |
15052145 |
attg |
15052142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 15066547 - 15066347
Alignment:
| Q |
17 |
aatatcactgtctttagcatgaaaattattttgaaaagagatcgtagattggataagtgtagatggacaccaaaattcatgataaaaatacaaatattga |
116 |
Q |
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||||||||| ||||| |||||||||||||||||||||||| || |||||||||||| || ||||||||||||||| ||||||||||||| ||||||||| |
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| T |
15066547 |
aatatcactatctttggcatgaaaattattttgaaaagagttcacagattggataagagttgatggacaccaaaatccatgataaaaataaaaatattga |
15066448 |
T |
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| Q |
117 |
cttacagacccatcatcttctctaggaagagacaagattaggttattataatgatggattaccttgttttcttcgctaattgtttcttgtccatcccttg |
216 |
Q |
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| || | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15066447 |
gtatcacatccatt---ttctctaggaagagacaagattaggttattataatcatggattaccttgttttcttcgctaattgtttcttgtccatcccttg |
15066351 |
T |
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| Q |
217 |
attg |
220 |
Q |
| |
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|||| |
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| T |
15066350 |
attg |
15066347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 15214896 - 15215096
Alignment:
| Q |
17 |
aatatcactgtctttagcatgaaaattattttgaaaagagatcgtagattggataagtgtagatggacaccaaaattcatgataaaaatacaaatattga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||| ||||| || ||||||||||||||| ||||| ||||||||| ||||||| |
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| T |
15214896 |
aatatcactgtctttagcatgaaaattattttgaaaagagttcacagattgaataagagttgatggacaccaaaatccatgaaaaaaatacatatattga |
15214995 |
T |
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| Q |
117 |
cttacagacccatcatcttctctaggaagagacaagattaggttattataatgatggattaccttgttttcttcgctaattgtttcttgtccatcccttg |
216 |
Q |
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| || ||| ||| |||||||||||| |||||||||||||||||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
15214996 |
gtctcacacc---cattttctctaggaagtgacaagattaggttattataatcatggcttaccttgtttactttgctagttgtttcttgtccatcccttg |
15215092 |
T |
|
| Q |
217 |
attg |
220 |
Q |
| |
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|||| |
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| T |
15215093 |
attg |
15215096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 15076386 - 15076300
Alignment:
| Q |
134 |
ttctctaggaagagacaagattaggttattataatgatggattaccttgttttcttcgctaattgtttcttgtccatcccttgattg |
220 |
Q |
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|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15076386 |
ttctttaggaagtgacaagattaggttattataatcatggattaccttgttttcttcgctaattgtttcttgtccatcccttgattg |
15076300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 13033216 - 13033048
Alignment:
| Q |
17 |
aatatcactgtctttagcatgaaaattattttgaaaagagatcgtagattggataagtgtagatggacaccaaaattcatgataaaaatacaaatattga |
116 |
Q |
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||||||| ||||||| |||||||| ||||||||||||| | | |||||||||||| ||||||||||||||| ||||| ||||||||| ||||| | |
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| T |
13033216 |
aatatcattgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgaaaaaaatacatatattca |
13033117 |
T |
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| Q |
117 |
cttacagacccatcatcttctctaggaagagacaagattaggttattataatgatggattaccttgttttct |
188 |
Q |
| |
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| || |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13033116 |
gtctcacacccatt---ttctctaggaagtgacaagattaggttattataatcatggattaccttgttttct |
13033048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 15047562 - 15047452
Alignment:
| Q |
20 |
atcactgtctttagcatgaaaattattttgaaaagagatcgtagattggataagtgtagatggacaccaaaattcatg-ataaaaatacaaatattgact |
118 |
Q |
| |
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|||||| ||||| || | ||||| ||||||||||||| | | ||||||||||| || ||||||||| |||| |||| | |||||||||||||||| | |
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| T |
15047562 |
atcactctctttggccttaaaataattttgaaaagagtttatggattggataagagttgatggacacagaaatccatgaaaaaaaatacaaatattgggt |
15047463 |
T |
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| Q |
119 |
tacagacccat |
129 |
Q |
| |
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|| |||||||| |
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| T |
15047462 |
tagagacccat |
15047452 |
T |
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