View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_low_25 (Length: 211)
Name: NF13149_low_25
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 43173597 - 43173776
Alignment:
| Q |
16 |
atcaaattagagagttcaacatttttgtaaatggggagcttttaaatagtgatccaatcaatactgtgtatcttcaaaacctgtattatttatcagttat |
115 |
Q |
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| T |
43173597 |
atcaaattagagagttcaacatttttgtaaatggggagcttttaaatagtgatccaatcaatactgtgtatcttcaaaacctgtattatttatcagttat |
43173696 |
T |
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| Q |
116 |
tagtgaaacgaagttggaactttggtttaataagactagtagatcaactcttccaccactatttaatgccgtcgagatat |
195 |
Q |
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| T |
43173697 |
tagtgaaacgaagttggaacattggtttaataagactagtagatcaactcttccaccactatttaatgccgtcgagatat |
43173776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 43163921 - 43164097
Alignment:
| Q |
16 |
atcaaattagagagttcaacatttttgtaaatggggagcttttaaatagtgatccaatcaatactgtgtatcttcaaaacctgtattatttatcagttat |
115 |
Q |
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||||||| ||||||||||| ||||||||||||||| ||||| ||| |||||| | ||||| || |||||||||||||||||||||||| | ||| ||| |
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| T |
43163921 |
atcaaatcagagagttcaatatttttgtaaatgggaagcttctaagtagtga---agtcaatcctttgtatcttcaaaacctgtattattcaacagctat |
43164017 |
T |
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| Q |
116 |
tagtgaaacgaagttggaactttggtttaataagactagtagatcaactcttccaccactatttaatgccgtcgagatat |
195 |
Q |
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| T |
43164018 |
aagtgaaactaagttaaaactttggcttaataagactagtagatcaactcttccaccgctattcaatgcggtcgagatat |
43164097 |
T |
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