View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13149_low_5 (Length: 542)
Name: NF13149_low_5
Description: NF13149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13149_low_5 |
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| [»] chr1 (14 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 32252972 - 32253496
Alignment:
| Q |
19 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcatagtacatgttattgattagttcattaaatttca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32252972 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcatagtacatgttattgattagttcattaaatttca |
32253071 |
T |
|
| Q |
119 |
ttaatttgacttatcacatcatagaaatgtacacattggttaaata-ttagttttatgcataccctgtagaggagaacatattcggcactgaggcgtaaa |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253072 |
ttaatttaacttatcacatcatagaaatgtacacattggttaaataattagttttatgcataccctgtagaggagaacatattcggcactgaggcgtaaa |
32253171 |
T |
|
| Q |
218 |
ttgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggttgtagagatctgcatgtgcagggcgagcgatgttctccacaa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253172 |
ttgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggttgtagagatctgcatgtgcagggcgagcgatgttctccacaa |
32253271 |
T |
|
| Q |
318 |
gtcttgcactgcagatagtttcttccaaaccattctgtccacgtgttctttgtttctctctgctttctttttcccaccatggacgaccacgaccgtaggg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253272 |
gtcttgcactgcagatagtttcttccaaaccattctgtccacgtgttctttgtttctctctgctttctttttcccaccatggacgaccacgaccgtaggg |
32253371 |
T |
|
| Q |
418 |
atcatcttctcgctctctttcttcctgactatgtctgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253372 |
atcatcttctcgctctctttcttcctgactatgtctgggatgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattct |
32253471 |
T |
|
| Q |
518 |
ctttcttcctgactatgtccgggat |
542 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
32253472 |
ctttcttcctgactatgtccgggat |
32253496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 176 - 541
Target Start/End: Original strand, 32242558 - 32242923
Alignment:
| Q |
176 |
cataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggt |
275 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32242558 |
cataccctatagaggagaacatattcagcactgaggcgtaaattgcggaggattgggagagttaaactgttaacatcactgatgcgacctgcacgtgggt |
32242657 |
T |
|
| Q |
276 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccattctgtccacgtgttctttgtttctc |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32242658 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccattctgtccacgtgtcctttgtttctc |
32242757 |
T |
|
| Q |
376 |
tctgctttctttttcccaccatggacgaccacgaccgtagggatcatcttctcgctctctttcttcctgactatgtctgggacgtcttgggtctcgctct |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32242758 |
tctgctttctttttcccaccatggacgaccacgaccgtagggatcatcttctcgctctctttcttcctgactatgtccgggacgtcttgggtctcgctct |
32242857 |
T |
|
| Q |
476 |
ctttcttcctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccggga |
541 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32242858 |
ctttcttcctggctatgtccgggatgtcttggatcccattctctttctttctgactatgtccggga |
32242923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 32248386 - 32248561
Alignment:
| Q |
176 |
cataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggt |
275 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
32248386 |
cataccctgtagaggagaacatattcagcactgaggcgtaaattgcgaaggattgggagggttaaactgttagcatcgctgatgcgacctgcacgtgggt |
32248485 |
T |
|
| Q |
276 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccatt |
351 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
32248486 |
tgtagagatctgcacgtgcagggcgagcgatgttctccacaatccttaaactgcagatagtttcttccaaaccatt |
32248561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 30605136 - 30604961
Alignment:
| Q |
178 |
taccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggttg |
277 |
Q |
| |
|
|||||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| || || |||||||||||| |
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| T |
30605136 |
taccctgtagaggactacgtattcggcaccaagacgtaaattgcggaggattgggagggttaaactgttgacggtgctgattcgtccggcacgtgggttg |
30605037 |
T |
|
| Q |
278 |
tagagatctgcatgtgcagggcgagcgatgttctccacaagtctt-gcactgcagatagtttcttccaaaccattct |
353 |
Q |
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| T |
30605036 |
tagaggtctgcacgtgcagggtgagctatgttct-cgcgaatcttcgcactgcagatagtttcttccaaaccattct |
30604961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 459 - 541
Target Start/End: Original strand, 32248579 - 32248661
Alignment:
| Q |
459 |
gtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccggga |
541 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
32248579 |
gtcttgggtctcgttctctttcttcctggccatgtccgggacgtcttggatcccattctctttctttctgactatgtccggga |
32248661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 425 - 535
Target Start/End: Original strand, 32253421 - 32253531
Alignment:
| Q |
425 |
tctcgctctctttcttcctgactatgtctgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttctt |
524 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||||| || | |||||||||||||| |||||||||||||||||||| |||| |||||||||| |
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| T |
32253421 |
tctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtcccgctctctttctt |
32253520 |
T |
|
| Q |
525 |
cctgactatgt |
535 |
Q |
| |
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| ||||||||| |
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| T |
32253521 |
cttgactatgt |
32253531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 32242849 - 32242966
Alignment:
| Q |
425 |
tctcgctctctttcttcctgactatgtctgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttctt |
524 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||||| || | |||||||||| ||| |||||||||||| ||||||| || | ||||||||||| |
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| T |
32242849 |
tctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttctt |
32242948 |
T |
|
| Q |
525 |
cctgactatgtccgggat |
542 |
Q |
| |
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|||| ||||||| ||||| |
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| T |
32242949 |
cctggctatgtctgggat |
32242966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 431 - 515
Target Start/End: Original strand, 32242897 - 32242981
Alignment:
| Q |
431 |
tctctttcttcctgactatgtctgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccatt |
515 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
32242897 |
tctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccatt |
32242981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 431 - 515
Target Start/End: Original strand, 32248635 - 32248719
Alignment:
| Q |
431 |
tctctttcttcctgactatgtctgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccatt |
515 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
32248635 |
tctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttgtttcccatt |
32248719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 32248587 - 32248704
Alignment:
| Q |
425 |
tctcgctctctttcttcctgactatgtctgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttctt |
524 |
Q |
| |
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||||| |||||||||||||| | ||||| |||||||||||| || | |||||||||| ||| |||||||||||| ||||||| || | ||||||||||| |
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| T |
32248587 |
tctcgttctctttcttcctggccatgtccgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttctt |
32248686 |
T |
|
| Q |
525 |
cctgactatgtccgggat |
542 |
Q |
| |
|
|||| ||||||| ||||| |
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| T |
32248687 |
cctggctatgtctgggat |
32248704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 32242392 - 32242455
Alignment:
| Q |
19 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctg |
82 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32242392 |
ctctaatcacgtacaaaaggctgttggcgttgatgttccagtgtggagcatatatgccattctg |
32242455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 32248222 - 32248285
Alignment:
| Q |
19 |
ctcttatcacgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctg |
82 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32248222 |
ctctaatcacgtacaaaaggctgttggcgttgatgttccagtgtggagcatatatgccattctg |
32248285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 467 - 542
Target Start/End: Original strand, 32242807 - 32242882
Alignment:
| Q |
467 |
tctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggat |
542 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| || | |||||||||||||| ||||||||||||| |
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| T |
32242807 |
tctcgctctctttcttcctgactatgtccgggacgtcttgggtctcgctctctttcttcctggctatgtccgggat |
32242882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 30605384 - 30605327
Alignment:
| Q |
28 |
cgtacaataggctgttggcgttgatgttccagtgtggagcatatataccattctgcat |
85 |
Q |
| |
|
|||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||| |
|
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| T |
30605384 |
cgtacattaggctgttggcgttcacggtccagtgtggagcatatataccattctgcat |
30605327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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