View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_1 (Length: 765)
Name: NF1314_high_1
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 214 - 606
Target Start/End: Original strand, 52457992 - 52458379
Alignment:
| Q |
214 |
cgaccagaacagaacagtatccgttacaattcactttaatttgggacctatttgaatttgatcccacatatattttttctttaatacaataatcaaaaga |
313 |
Q |
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| T |
52457992 |
cgaccagaacagaacagtatccgttacaattcactttaatttgggacctatttgaatttgatcccacatatattttttctttaatacaataatcaaaaga |
52458091 |
T |
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| Q |
314 |
ataattaataaggtaatgcaatgtaagtaatccagtagtttgtattgtaggccatgaggtgtgtgatgatcgaatccaacaacaacagcaacgctccagt |
413 |
Q |
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| T |
52458092 |
ataattaataaggtaatgtaatgtaagtaatccagtagtttgt-----aggccatgaggtgtgtgatgatcgaatccaacaacaacagcaacgctccagt |
52458186 |
T |
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| Q |
414 |
accgcatattccgcgcggaatagaaacctttttcaaactttttctctgaccataatacccttctccttttgctaaaattcccacacaaaaactaaccagt |
513 |
Q |
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| T |
52458187 |
accgcatattccgcgcggcatagaaacctttttcaaactttttctctgaccataatacccttctccttttgctaaaattcccacacaaaaactaaccggt |
52458286 |
T |
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| Q |
514 |
aaagaaacacaacacaacttcaccacactacacagtcactcgttcgttcaaatcaatcatttctgcttcaaatcattcaattcaattcatatc |
606 |
Q |
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| T |
52458287 |
aaagaaacacaacacaacttcactacactacacagtcactcgttcgttcaaatcaatcatttctgcttcaaatcattcaattcaattcatatc |
52458379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 600 - 703
Target Start/End: Original strand, 6316618 - 6316721
Alignment:
| Q |
600 |
tcatatcagactttataaataggaaactaaagatcaatgcaaatagagaaaaataaccatattcactgccgaaaactatatcataacctcagtctgcatc |
699 |
Q |
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| T |
6316618 |
tcatatcagactttataaataggaaactaaagatcaatgcaaatagagaaaaataaccatattcactgccgaaaactatatcataacctcagtctgcatc |
6316717 |
T |
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| Q |
700 |
atat |
703 |
Q |
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|||| |
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| T |
6316718 |
atat |
6316721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 52457770 - 52457876
Alignment:
| Q |
15 |
aatacaatatattgcaatggtttccttgcacccaatacccataagcttgctagagataaactactcagtactgatcattggtcacctagtatttaaaaag |
114 |
Q |
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| T |
52457770 |
aatacaatatattgcaatggtttccttgcacccaatacccataagcttgctagagataaactactcagtactgatcattggtcaccaagtattttaaaag |
52457869 |
T |
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| Q |
115 |
agtcatc |
121 |
Q |
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|||||| |
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| T |
52457870 |
ggtcatc |
52457876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 52457886 - 52457937
Alignment:
| Q |
110 |
aaaagagtcatctttgtaccattaatattaaatgtctaagctctttaattat |
161 |
Q |
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| T |
52457886 |
aaaagagtcatctttgtaccattaatattaaatgtctaagctctttaattat |
52457937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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