View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_high_102 (Length: 256)

Name: NF1314_high_102
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_high_102
NF1314_high_102
[»] chr5 (3 HSPs)
chr5 (13-256)||(7857845-7858088)
chr5 (13-256)||(6901456-6901700)
chr5 (166-256)||(6828053-6828143)
[»] chr7 (6 HSPs)
chr7 (13-256)||(31495060-31495306)
chr7 (128-249)||(32631396-32631517)
chr7 (166-252)||(39300531-39300617)
chr7 (170-256)||(48545141-48545227)
chr7 (157-249)||(36354747-36354839)
chr7 (70-114)||(39300669-39300713)
[»] chr1 (7 HSPs)
chr1 (70-256)||(9174687-9174873)
chr1 (70-256)||(9832527-9832703)
chr1 (86-249)||(49459278-49459442)
chr1 (166-256)||(10897537-10897627)
chr1 (166-256)||(33242561-33242651)
chr1 (166-256)||(36402980-36403070)
chr1 (13-45)||(9191975-9192007)
[»] chr8 (3 HSPs)
chr8 (107-251)||(24295830-24295974)
chr8 (166-256)||(37566621-37566711)
chr8 (166-256)||(30381922-30382012)
[»] chr2 (8 HSPs)
chr2 (166-256)||(11535570-11535660)
chr2 (166-256)||(24192763-24192853)
chr2 (124-249)||(24935387-24935512)
chr2 (128-249)||(25684080-25684201)
chr2 (157-234)||(30046483-30046560)
chr2 (157-234)||(30137527-30137604)
chr2 (86-215)||(38821659-38821788)
chr2 (98-256)||(38534644-38534799)
[»] chr4 (4 HSPs)
chr4 (167-256)||(54510457-54510546)
chr4 (129-252)||(40144469-40144590)
chr4 (185-256)||(47686736-47686807)
chr4 (166-256)||(5117712-5117801)
[»] chr3 (7 HSPs)
chr3 (88-256)||(33118063-33118228)
chr3 (166-249)||(39337519-39337602)
chr3 (86-215)||(24573743-24573872)
chr3 (86-256)||(6783289-6783454)
chr3 (166-256)||(27593842-27593932)
chr3 (162-211)||(48377792-48377841)
chr3 (166-236)||(43151945-43152014)
[»] chr6 (2 HSPs)
chr6 (128-249)||(35165509-35165630)
chr6 (166-256)||(10643262-10643352)
[»] scaffold0057 (1 HSPs)
scaffold0057 (86-139)||(17283-17336)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 7857845 - 7858088
Alignment:
Q  13 aatattacttaagaagacatgaaactagaaccactttgttattgnnnnnnnnnnnnntgtatcgatttatttctttatcatgcaaacctttgagttttta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  7857845 aatattacttaagaagacatgaaactagaaccactttgttattgaaaaatttaaaaatgtatcgatttatttctttatcatgcaaacctttgagttttta 7857944  T
Q  113 ttatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatctta 212  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |||||||| |||    
T  7857945 ttatctttagtcattcagtcttgtaattttgtatttttgtggtcatttgatagagtcaattcaaatcttccgaattctcataaaatactttcaaatttta 7858044  T
Q  213 aaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7858045 aaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 7858088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 6901700 - 6901456
Alignment:
Q  13 aatattacttaagaagacatgaaactagaaccactttgttattgnnnnnnnnnnnnnt-gtatcgatttatttctttatcatgcaaacctttgagttttt 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||             | ||||||||||  || |||||||||||||||||||| |||||    
T  6901700 aatattacttaagaagacatcaaactagaaccactttgttattgaaaaattaaaaaattgtatcgattttattttttatcatgcaaacctttgatttttt 6901601  T
Q  112 attatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatctt 211  Q
    ||||||||||||||| |||||||| || ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||    
T  6901600 attatatttagtcatccactcttgcaactttgtatttttatggttatttgaaagagtcattttaaatcttacgaattctcataaaatactttcaaatttt 6901501  T
Q  212 aaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||    
T  6901500 aaaaaatctttgagttaaaatccttcgaaattttaaaagtctttt 6901456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 6828143 - 6828053
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| ||||||| |||||||| ||||||||||| | || | | |||| ||||||||||  ||||||||||||||||||    
T  6828143 agtcatttcaaatcttatgaattcttataaaatactttcaaatctttagaagtttatgagctaaaatccctcaaaatcttaaaagtctttt 6828053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 31495060 - 31495306
Alignment:
Q  13 aatattacttaagaagacatgaaactagaaccactttgttattgnnnnnnnnnnnnnt-gtatcgatttatttctttatcatgcaaacctttgagttttt 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||             | |||| |||||  || |||||||||||||||||||| |||||    
T  31495060 aatattacttaagaagacatgaaactagaaccactttattattgaaaaattaaaaaattgtattgattttattttttatcatgcaaacctttgatttttt 31495159  T
Q  112 --attatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatc 209  Q
      ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  31495160 ttattatctttagtcatccactcttgtaattttgtatttttgtggttatttgatagagtcatttcaaatcttacgaattctcataaaatactttcaaatc 31495259  T
Q  210 ttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||    
T  31495260 ttaaaaaatctttgagttaaaatccttcgaaatcttaaaagtctttt 31495306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 32631396 - 32631517
Alignment:
Q  128 cactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagtt 227  Q
    |||||||||||||||| ||||||      |||| |||||||||||| |||||||| ||||||||||||| || ||||||||||| |||| ||||||||||    
T  32631396 cactcttgtaattttgaattttttctaaaatttaatagagtcatttcaaatcttaggaattctcataaagtactttcaaatctttaaaagtctttgagtt 32631495  T
Q  228 aaaatcccttgaaatcttaaaa 249  Q
    |||||||||  |||||| ||||    
T  32631496 aaaatccctcaaaatctcaaaa 32631517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 39300617 - 39300531
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtc 252  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||    
T  39300617 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtc 39300531  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 48545227 - 48545141
Alignment:
Q  170 attttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||| |||||||| |||||||||||||||| ||||||||||| | || ||| |||| ||||||||||  |||||| |||||||||||    
T  48545227 atttcaaatcttatgaattctcataaaatactttcaaatctttagaagtctatgagctaaaatccctcaaaatctaaaaagtctttt 48545141  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 36354839 - 36354747
Alignment:
Q  157 atttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaa 249  Q
    |||| ||||||| |||| |||||||| ||||| ||||||| || ||||||||||| |||| ||||||||||||||| |||  |||||| ||||    
T  36354839 atttaatagagtgatttcaaatcttaggaattttcataaagtactttcaaatctttaaaagtctttgagttaaaattcctcaaaatctcaaaa 36354747  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 39300713 - 39300669
Alignment:
Q  70 tgtatcgatttatttctttatcatgcaaacctttgagtttttatt 114  Q
    |||||||||||  || |||||||||||||||||||| ||||||||    
T  39300713 tgtatcgattttattttttatcatgcaaacctttgattttttatt 39300669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 9174687 - 9174873
Alignment:
Q  70 tgtatcgatttatttctttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtc 169  Q
    |||||||||||  || |||||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||| |||||||||||| ||||| |||||||    
T  9174687 tgtatcgattttattttttatcatgcaaacctttgattttttattatctttagtcatccactcttgtaactttatatttttgtggttatttggtagagtc 9174786  T
Q  170 attttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  9174787 atttcaaatcttacgaattctcataaaatactttcaaatcttaaaaaatcttggagttaaaatcttttgaaatcttaaaagtctttt 9174873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 9832527 - 9832703
Alignment:
Q  70 tgtatcgatttatttctttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtc 169  Q
    |||||||||||  || |||||||||||||||||||| ||||||||     ||||||   ||||||||||||||| ||| |||     |||||||||  ||    
T  9832527 tgtatcgattttattttttatcatgcaaacctttgattttttatt-----tagtca---actcttgtaattttgaattattgctaaaatttgatag--tc 9832616  T
Q  170 attttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||||||    
T  9832617 atttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtctttt 9832703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 49459442 - 49459278
Alignment:
Q  86 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcatttt-aaatcttacg 184  Q
    |||| ||||||||| ||||| |||| |||||   ||||||| ||||||||||||||| ||||||||     |||||||||||||| ||| ||||||||      
T  49459442 tttaacatgcaaacatttgatttttgattatcactagtcatccactcttgtaattttctatttttgctaaaatttgatagagtcaatttcaaatcttaaa 49459343  T
Q  185 aattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaa 249  Q
    |||||||||||| ||||||||||| ||||||||||| || ||||||||| |   |||||||||||    
T  49459342 aattctcataaagtattttcaaattttaaaaaatctctgggttaaaatctcgcaaaatcttaaaa 49459278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 10897537 - 10897627
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||||||    
T  10897537 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtctttt 10897627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 33242651 - 33242561
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||| |||| ||| | || ||||||||||| ||||||||||||||||||    
T  33242651 agtcatttcaaatcttatgaattctcataaaatgctttcaaatctttaaaagtctataagctaaaatcccttaaaatcttaaaagtctttt 33242561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 36402980 - 36403070
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||||||    
T  36402980 agtcatttcaaatcttatgaattctcataaaatgctttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtctttt 36403070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 9191975 - 9192007
Alignment:
Q  13 aatattacttaagaagacatgaaactagaacca 45  Q
    ||||||||||||||||| |||||||||||||||    
T  9191975 aatattacttaagaagatatgaaactagaacca 9192007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 24295974 - 24295830
Alignment:
Q  107 tttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaa 206  Q
    |||||| ||| ||||||||| |||||||| ||| |||||||||||     ||||||| |||||| || ||||||||| |||| |||||||||| ||| ||    
T  24295974 tttttaatatctttagtcatccactcttggaatcttgtatttttgctaaaatttgattgagtcacttcaaatcttacaaattatcataaaataattttaa 24295875  T
Q  207 atcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagt 251  Q
    |||||||||| ||||| |||||||||||||| |||||||||||||    
T  24295874 atcttaaaaagtctttaagttaaaatccctttaaatcttaaaagt 24295830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 37566711 - 37566621
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| |||||||||||||||| |||||||| || |||| ||| |||| ||||||||||  ||||||||||||||||||    
T  37566711 agtcatttcaaatcttatgaattctcataaaatactttcaaatatttaaaagtctatgagctaaaatccctcaaaatcttaaaagtctttt 37566621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 30382012 - 30381922
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||| |||| ||| |||| ||||||||||  |||||| |||||||||||    
T  30382012 agtcatttcaaatcttatgaattctcataaaatgctttcaaatctttaaaagtctatgagctaaaatccctcaaaatctcaaaagtctttt 30381922  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 11535570 - 11535660
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||||||    
T  11535570 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtctttt 11535660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 24192853 - 24192763
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||||||    
T  24192853 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtctttt 24192763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 24935512 - 24935387
Alignment:
Q  124 cattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttg 223  Q
    |||||||||||||||||||| ||||||      |||| |||||||||||| ||||||||  |||||||||||| || ||||||||||| |||| | ||||    
T  24935512 cattcactcttgtaattttgaattttttctaaaatttaatagagtcatttcaaatcttagaaattctcataaagtactttcaaatctttaaaagtttttg 24935413  T
Q  224 agttaaaatcccttgaaatcttaaaa 249  Q
    |||||||||||||  |||||| ||||    
T  24935412 agttaaaatccctcaaaatctcaaaa 24935387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 25684201 - 25684080
Alignment:
Q  128 cactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagtt 227  Q
    |||||||||||||||| ||||||      |||| |||||||||||| |||||||| |||||| |||||| || ||||||||||| |||| | ||||||||    
T  25684201 cactcttgtaattttgaattttttctaaaatttaatagagtcatttcaaatcttaggaattcacataaagtactttcaaatctttaaaagtttttgagtt 25684102  T
Q  228 aaaatcccttgaaatcttaaaa 249  Q
    |||||||||  |||||| ||||    
T  25684101 aaaatccctcaaaatctaaaaa 25684080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 30046483 - 30046560
Alignment:
Q  157 atttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcc 234  Q
    |||| |||||||||||| ||||| || ||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  30046483 atttaatagagtcatttcaaatcctaggaattctcataaagtactttcaaatctttaaaagtctttgagttaaaatcc 30046560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 30137527 - 30137604
Alignment:
Q  157 atttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcc 234  Q
    |||| |||||||||||| ||||| || ||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  30137527 atttaatagagtcatttcaaatcctaggaattctcataaagtactttcaaatctttaaaagtctttgagttaaaatcc 30137604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 38821788 - 38821659
Alignment:
Q  86 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacga 185  Q
    ||||||||||||||||||||  ||||| ||| |||   ||| || ||||||||||||| ||||||||    |||||| | ||||||||||||| ||||||    
T  38821788 tttatcatgcaaacctttgatattttaatatttttgtacatccattcttgtaattttgaatttttgttaaaatttgacaaagtcattttaaattttacga 38821689  T
Q  186 attctcataaaatattttcaaatcttaaaa 215  Q
    ||||||| ||| || || ||||||||||||    
T  38821688 attctcacaaagtacttccaaatcttaaaa 38821659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 256
Target Start/End: Complemental strand, 38534799 - 38534644
Alignment:
Q  98 acctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaa 197  Q
    |||||||| |||||| ||| ||  |||||  |||||||||||||| |||||||||    ||||| ||||||||| |  | ||||||||||||||| |||     
T  38534799 acctttgattttttaatatcttctgtcatctactcttgtaattttttatttttgttaagatttggtagagtcatct--actcttacgaattctcacaaac 38534702  T
Q  198 tattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    || ||| ||||||| |||| ||| |||||||||||||    |||||||| |||||||||    
T  38534701 tactttaaaatctt-aaaagtctatgagttaaaatccacctaaatcttagaagtctttt 38534644  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 54510457 - 54510546
Alignment:
Q  167 gtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||||||    
T  54510457 gtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtctttt 54510546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 40144469 - 40144590
Alignment:
Q  129 actcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagtta 228  Q
    ||||||||||||||| |||||||     |||||||||  | |||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||    
T  40144469 actcttgtaattttgaatttttgctaaaatttgatag--ttatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagcta 40144566  T
Q  229 aaatcccttgaaatcttaaaagtc 252  Q
    ||||||||  ||||||||||||||    
T  40144567 aaatccctcaaaatcttaaaagtc 40144590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 47686736 - 47686807
Alignment:
Q  185 aattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    ||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  ||||||||||||||||||    
T  47686736 aattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaagtctttt 47686807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 5117712 - 5117801
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||| |||| | | |||| ||||||||||  ||||||||||||| ||||    
T  5117712 agtcatttcaaatct-atgaattctcataaaatactttcaaatctttaaaagtttatgaggtaaaatccctcaaaatcttaaaagtatttt 5117801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 33118228 - 33118063
Alignment:
Q  88 tatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaat 187  Q
    |||||||||||||||||| |||||| ||| |||| | ||||||||||||||||||| |||||||     |||||| | || |||||||||||||||||||    
T  33118228 tatcatgcaaacctttgaatttttaatatctttatttattcactcttgtaattttgaatttttgctaaaatttgacaaag-cattttaaatcttacgaat 33118130  T
Q  188 tctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||  |||||||| ||| |||| |||| ||| | ||||||||||| |  ||||||||||| ||||||    
T  33118129 tctca-caaatatttccaattctt-aaaagtctataagttaaaatccatccaaatcttaaaaatctttt 33118063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 39337602 - 39337519
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaa 249  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||  |||||||||||    
T  39337602 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagtctatgagctaaaatccctcaaaatcttaaaa 39337519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 24573872 - 24573743
Alignment:
Q  86 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacga 185  Q
    |||||||||||||||||||| |||||| ||| |||  |||| |||||||||||||||| |||||||     |||||  | || ||||||| |||||||||    
T  24573872 tttatcatgcaaacctttgattttttaatatctttgttcatccactcttgtaattttgaatttttgctaaaatttggcaaagccattttatatcttacga 24573773  T
Q  186 attctcataaaatattttcaaatcttaaaa 215  Q
    ||||||| ||| || || ||||||||||||    
T  24573772 attctcacaaagtacttccaaatcttaaaa 24573743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 256
Target Start/End: Complemental strand, 6783454 - 6783289
Alignment:
Q  86 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacga 185  Q
    ||||||||  |||||||||| |||| ||||| ||||||||| |||||||||||||||  ||| |||     |||| ||||  |||||| |||| ||| ||    
T  6783454 tttatcatataaacctttgactttt-attatctttagtcatccactcttgtaattttaaattattgctaaaattttatag--tcatttcaaattttatga 6783358  T
Q  186 attctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
     ||||||||||||| |||||||||||||||  | | |||| |||||||||||||||||||| |||||||||    
T  6783357 -ttctcataaaatactttcaaatcttaaaagtt-tatgagctaaaatcccttgaaatcttacaagtctttt 6783289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 27593842 - 27593932
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||| |||| |   |||  ||||||||||  ||||||||||||||||||    
T  27593842 agtcatttcaaatcttatgaattctcataaaatactttcaaatctttaaaagttcatgaactaaaatccctcaaaatcttaaaagtctttt 27593932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 48377792 - 48377841
Alignment:
Q  162 atagagtcattttaaatcttacgaattctcataaaatattttcaaatctt 211  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  48377792 atagagtcattttaaatcttatgaattctcacaaaatactttcaaatctt 48377841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 43151945 - 43152014
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatccct 236  Q
    |||| ||| |||||| | ||||| ||||||| || ||||||||||| |||| |||||||||||||||||||    
T  43151945 agtcgtttcaaatctcatgaattttcataaagtactttcaaatctt-aaaagtctttgagttaaaatccct 43152014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 35165509 - 35165630
Alignment:
Q  128 cactcttgtaattttgtatttttgtggtcatttgatagagtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagtt 227  Q
    |||||||||||||||| ||||||      |||| |||||||||||| |||||||| |||||| |||||| || ||||||||||| |||| | ||||||||    
T  35165509 cactcttgtaattttgaattttttctaaaatttaatagagtcatttcaaatcttaggaattcacataaagtactttcaaatctttaaaagtttttgagtt 35165608  T
Q  228 aaaatcccttgaaatcttaaaa 249  Q
    |||||||||  |||||| ||||    
T  35165609 aaaatccctcaaaatctaaaaa 35165630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 10643352 - 10643262
Alignment:
Q  166 agtcattttaaatcttacgaattctcataaaatattttcaaatcttaaaaaatctttgagttaaaatcccttgaaatcttaaaagtctttt 256  Q
    |||||||| |||||||| ||||||| |||||||  |||||||| || | || | | |||| ||||||||||  ||||||||||||||||||    
T  10643352 agtcatttcaaatcttatgaattcttataaaattctttcaaatttttataagtttatgagctaaaatccctcaaaatcttaaaagtctttt 10643262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 17336 - 17283
Alignment:
Q  86 tttatcatgcaaacctttgagtttttattatatttagtcattcactcttgtaat 139  Q
    |||||||||||||||||| | ||||||||||  |||||||| | ||||||||||    
T  17336 tttatcatgcaaacctttaattttttattatcgttagtcatcctctcttgtaat 17283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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