View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_104 (Length: 254)
Name: NF1314_high_104
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_104 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 7858215 - 7858326
Alignment:
| Q |
51 |
acaatgaaatacacctcttatcatttcaaattttgctccatgaaaattaaattctttatgtgaagagtgtaaataattttgacttgttttttatgaatga |
150 |
Q |
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| T |
7858215 |
acaatgaaatacacctcttatcatttcaaatcttgctccatgaaaattaaattctttatgtgaagagtgtaaataattttgacttgttttttacgaatga |
7858314 |
T |
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| Q |
151 |
taatagaaacaa |
162 |
Q |
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|||||||||||| |
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| T |
7858315 |
taatagaaacaa |
7858326 |
T |
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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 7858871 - 7858941
Alignment:
| Q |
157 |
aaacaaatataagactcaaattttgcaatgtcataccttaataaggataagcgacctcaccacgctcaatg |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7858871 |
aaacaaatataagactcaaattttgcaatgtcataccttaataaggataagcgacctcaccacgctcaatg |
7858941 |
T |
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