View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_110 (Length: 251)
Name: NF1314_high_110
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_110 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 28180415 - 28180194
Alignment:
| Q |
30 |
aattccattgggtaagatgttctcttagcattatcatcaattttcaatcattgaagaccttacattatttgaaactgagaaatatttataaggataatct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28180415 |
aattccattgggtaagatgttctcttagcattatcatcaattttcaatcattgaagaccttacattatttgaaactgagaaatatttatatggataatct |
28180316 |
T |
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| Q |
130 |
ataaaattgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggtttagattaattagactataatgtaaaatctactcg |
229 |
Q |
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| T |
28180315 |
ataaaattgaaaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggttcagattaattagactataatgtaaaatctactcg |
28180216 |
T |
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| Q |
230 |
aaatatgttcaccaatctatgc |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
28180215 |
aaatatgttcaccaatctatgc |
28180194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 235
Target Start/End: Complemental strand, 28242047 - 28241900
Alignment:
| Q |
92 |
cattatttgaaactgagaaatatttataaggataat--ctataaaattgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagcca |
189 |
Q |
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|||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28242047 |
cattatttgaaactgagaaatatttataagcatattaactataaagttgaaaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagcca |
28241948 |
T |
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| Q |
190 |
atggtttagatta--attagactataatgtaaaatctactcgaaatat |
235 |
Q |
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| T |
28241947 |
atggttcagattattattagactataaagtaaaatcttcttgaaatat |
28241900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 28148979 - 28148926
Alignment:
| Q |
31 |
attccattgggtaagatgttctcttagcattatcatcaattttcaatcattgaa |
84 |
Q |
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| T |
28148979 |
attccattgggtaagctgttctcatagcattatcatcaattttcaatcattgaa |
28148926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 28225097 - 28225040
Alignment:
| Q |
136 |
ttgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggt |
194 |
Q |
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| T |
28225097 |
ttgaaaatatcaagaatcatg-aatctagtctaacataaatatcaaagtagcaaatggt |
28225040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 235
Target Start/End: Complemental strand, 42209 - 42062
Alignment:
| Q |
92 |
cattatttgaaactgagaaatatttataaggataat--ctataaaattgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagcca |
189 |
Q |
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|||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42209 |
cattatttgaaactgagaaatatttataagcatattaactataaagttgaaaatatcaagaaccgtgcaatctagtctaacataaatatcaaagtagcca |
42110 |
T |
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| Q |
190 |
atggtttagatta--attagactataatgtaaaatctactcgaaatat |
235 |
Q |
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| T |
42109 |
atggttcagattattattagactataaagtaaaatcttcttgaaatat |
42062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 25595 - 25538
Alignment:
| Q |
136 |
ttgaaaatatgaagaaccgtgcaatctagtctaacataaatatcaaagtagccaatggt |
194 |
Q |
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|||||||||| ||||| | || |||||||||||||||||||||||||||||| |||||| |
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| T |
25595 |
ttgaaaatatcaagaatcatg-aatctagtctaacataaatatcaaagtagcaaatggt |
25538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 58778 - 58905
Alignment:
| Q |
47 |
tgttctcttagcattatcatcaattttcaatcattgaagaccttacattatttgaaactgagaaatatttataaggata--atctataaaattgaaaata |
144 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
58778 |
tgttctcatagcattatcatcaattttcaatcattgaagacgt-acattatttgaaactgataaatatttataagcatataatctataaaattgaaaata |
58876 |
T |
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| Q |
145 |
tgaagaaccgtgcaatctagtctaacata |
173 |
Q |
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| T |
58877 |
tcaagaaccgtgcaatctagtctaacata |
58905 |
T |
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