View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_124 (Length: 249)
Name: NF1314_high_124
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_124 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 38823423 - 38823217
Alignment:
| Q |
1 |
caccgcaattggtagcaatgacttattctgaagcccacttttaaataattggtatgatttgtttctttgaataagattttgtgaactgacatgtattt-g |
99 |
Q |
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| T |
38823423 |
caccgcaattgatagcaatgactcattctgaagcccacttttaaataattggtatg------------gaataagattttgtgaactgacatgtattttg |
38823336 |
T |
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| Q |
100 |
ttcacttattgagttaattttgaacaacgatgacatcttctgtcttgtagcttgatgc----ttaggtaacagttgaccatgttatgtcaaacatgtctt |
195 |
Q |
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| T |
38823335 |
ttcacttattgagttaattttgaacaacgatgacatcttctgtcttgtagtttgatgcttaattaggtaacagttgaccatgttatgtcaaacatgtctt |
38823236 |
T |
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| Q |
196 |
gctttgtatggaaaaacag |
214 |
Q |
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||||||||||||||||||| |
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| T |
38823235 |
gctttgtatggaaaaacag |
38823217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 38815845 - 38815916
Alignment:
| Q |
32 |
agcccacttttaaataattggtatgatttgtttctttgaataagattttgtgaactgacatgtatttgttca |
103 |
Q |
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|||| |||||| |||||||||||| ||||||| ||||||| |||||||||| | |||||||||||| |||| |
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| T |
38815845 |
agcctactttttaataattggtattatttgttcctttgaacaagattttgtaacatgacatgtatttattca |
38815916 |
T |
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