View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_high_125 (Length: 249)
Name: NF1314_high_125
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_125 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30790490 - 30790249
Alignment:
| Q |
1 |
caaaaaagaaaatttgaaaaggattagaaatggcttgccaacatcatgaactttccttgcaagatgaaataaggaaagaaatagaatcatttcataaaca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30790490 |
caaaaaaggaaatttgaaaaggattagaaatggcttgccaacatcatgaacttcccttgcaagatgaaataaggaaagaaatagaatcatttcataaaca |
30790391 |
T |
|
| Q |
101 |
aacttgagaattttattcatagtttttcctctttacaagtgcaaaatagaatataattatctctttaaattgtataaagttcaagctcttttgaaaataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30790390 |
aacttgagaattttattcatagtttttcctctttacaagtgaaaaatagaatataaatatctctttaaattgtataaagttcaagctcttttgaaaataa |
30790291 |
T |
|
| Q |
201 |
tttaatagtttttagctgtgtgtagtatttgtccctttagaat |
243 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30790290 |
tttaata-tttttagctgtctgtagtatttgtccctttagaat |
30790249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 30798928 - 30798860
Alignment:
| Q |
66 |
gaaataaggaaagaaatagaatcatttcataaacaaacttgagaattttattcatagtttttcctcttt |
134 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |||||| ||| | |||||||||||| ||||| |
|
|
| T |
30798928 |
gaaataaggaaagaaaaagaatcattgcataaacaaatttgagagtttcaatcatagtttttcgtcttt |
30798860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 29828369 - 29828410
Alignment:
| Q |
93 |
cataaacaaacttgagaattttattcatagtttttcctcttt |
134 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
29828369 |
cataaataaacttgagaattttactcatattttttcctcttt |
29828410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 30657458 - 30657546
Alignment:
| Q |
66 |
gaaataaggaaagaaatagaatcatttcataaacaaacttgagaattttattcatagtttttcctctttacaagtgcaaaatagaatat |
154 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| | |||||||| |||| ||||||||||| || || |||||||||||| |
|
|
| T |
30657458 |
gaaataagggaagaaatagaatcatagcataaacaaattcgagaatttccaccatatgttttcctctttgcatgtcaaaaatagaatat |
30657546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 4226843 - 4226910
Alignment:
| Q |
67 |
aaataaggaaagaaatagaatcatttcataaacaaacttgagaattttattcatagtttttcctcttt |
134 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||||| || | |||| |||||||||||| |
|
|
| T |
4226843 |
aaataagaaaagaaatagaatcataacatagacaaacttgagaagttcaaccatattttttcctcttt |
4226910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University