View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_high_129 (Length: 232)

Name: NF1314_high_129
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_high_129
NF1314_high_129
[»] chr1 (49 HSPs)
chr1 (1-186)||(46543263-46543445)
chr1 (3-118)||(50328027-50328142)
chr1 (1-116)||(52362550-52362665)
chr1 (3-117)||(32914959-32915073)
chr1 (3-117)||(40316831-40316945)
chr1 (3-120)||(50781454-50781571)
chr1 (3-117)||(36577299-36577413)
chr1 (2-116)||(48326037-48326150)
chr1 (3-116)||(13489732-13489845)
chr1 (3-116)||(15704950-15705063)
chr1 (3-107)||(52714798-52714902)
chr1 (1-45)||(3226019-3226063)
chr1 (1-116)||(8447804-8447919)
chr1 (1-107)||(15015466-15015571)
chr1 (3-116)||(10889934-10890047)
chr1 (3-116)||(35136914-35137027)
chr1 (59-117)||(50881997-50882055)
chr1 (61-107)||(51571243-51571289)
chr1 (3-45)||(29147833-29147875)
chr1 (2-107)||(33358055-33358160)
chr1 (3-116)||(34254239-34254352)
chr1 (60-117)||(29154905-29154962)
chr1 (3-44)||(51466837-51466878)
chr1 (1-33)||(8411689-8411721)
chr1 (1-44)||(4608220-4608263)
chr1 (60-107)||(7101584-7101631)
chr1 (3-46)||(11597707-11597750)
chr1 (82-121)||(19969457-19969496)
chr1 (1-44)||(35539233-35539276)
chr1 (1-44)||(45417840-45417883)
chr1 (3-37)||(19969529-19969563)
chr1 (4-38)||(29418757-29418791)
chr1 (4-34)||(30745058-30745088)
chr1 (4-34)||(30766509-30766539)
chr1 (1-35)||(50824809-50824843)
chr1 (3-44)||(44723431-44723472)
chr1 (1-37)||(8200143-8200179)
chr1 (60-116)||(8200202-8200258)
chr1 (5-37)||(29877370-29877402)
chr1 (70-106)||(34040396-34040432)
chr1 (1-45)||(34040459-34040503)
chr1 (1-37)||(37588642-37588678)
chr1 (1-45)||(44294083-44294127)
chr1 (1-37)||(44789110-44789146)
chr1 (1-37)||(46911361-46911397)
chr1 (1-33)||(47214276-47214308)
chr1 (1-37)||(47721477-47721513)
chr1 (1-37)||(47728469-47728505)
chr1 (3-35)||(51436740-51436772)
[»] chr5 (35 HSPs)
chr5 (3-122)||(189585-189704)
chr5 (1-116)||(15478726-15478841)
chr5 (3-116)||(32912108-32912221)
chr5 (3-116)||(8675321-8675434)
chr5 (3-120)||(43441808-43441925)
chr5 (3-117)||(10649505-10649619)
chr5 (3-117)||(19481069-19481183)
chr5 (1-107)||(19839883-19839989)
chr5 (1-116)||(34270395-34270510)
chr5 (1-107)||(1839242-1839348)
chr5 (1-107)||(15952942-15953048)
chr5 (1-117)||(41175593-41175709)
chr5 (1-44)||(6292189-6292232)
chr5 (1-44)||(9581647-9581690)
chr5 (1-107)||(15008447-15008553)
chr5 (1-44)||(30640858-30640901)
chr5 (1-107)||(38704094-38704200)
chr5 (72-122)||(189516-189566)
chr5 (3-49)||(6517782-6517828)
chr5 (8-117)||(10658991-10659099)
chr5 (3-116)||(34124691-34124804)
chr5 (3-116)||(43213947-43214060)
chr5 (1-34)||(21136331-21136364)
chr5 (3-44)||(34888769-34888810)
chr5 (1-37)||(15267852-15267888)
chr5 (60-107)||(6446415-6446462)
chr5 (1-44)||(43196585-43196628)
chr5 (3-107)||(9226370-9226475)
chr5 (61-107)||(21353272-21353318)
chr5 (3-44)||(6446478-6446519)
chr5 (3-44)||(18397125-18397166)
chr5 (1-37)||(4430903-4430939)
chr5 (2-34)||(14051285-14051317)
chr5 (1-37)||(18842288-18842324)
chr5 (1-37)||(20770199-20770235)
[»] chr6 (24 HSPs)
chr6 (3-117)||(35213448-35213562)
chr6 (3-117)||(754325-754439)
chr6 (3-107)||(1369430-1369534)
chr6 (1-107)||(32046766-32046872)
chr6 (3-116)||(13143270-13143383)
chr6 (3-119)||(18141186-18141302)
chr6 (3-107)||(20822766-20822869)
chr6 (2-117)||(32459403-32459518)
chr6 (1-44)||(26832714-26832757)
chr6 (1-44)||(868912-868955)
chr6 (1-107)||(2943502-2943608)
chr6 (3-107)||(2688961-2689066)
chr6 (61-107)||(31883200-31883246)
chr6 (60-116)||(3832590-3832646)
chr6 (1-44)||(14699624-14699667)
chr6 (3-34)||(17551348-17551379)
chr6 (3-46)||(23628429-23628472)
chr6 (1-44)||(28944939-28944982)
chr6 (65-107)||(6856060-6856102)
chr6 (60-117)||(6531067-6531124)
chr6 (3-44)||(24842437-24842478)
chr6 (3-44)||(34037048-34037089)
chr6 (2-46)||(31749434-31749478)
chr6 (1-37)||(33421828-33421864)
[»] chr3 (39 HSPs)
chr3 (3-116)||(46852020-46852133)
chr3 (3-117)||(3953362-3953476)
chr3 (3-118)||(21005062-21005177)
chr3 (3-117)||(51465801-51465915)
chr3 (3-117)||(55400069-55400183)
chr3 (3-117)||(24482850-24482964)
chr3 (3-117)||(50206857-50206971)
chr3 (3-107)||(39697119-39697223)
chr3 (3-107)||(46019532-46019636)
chr3 (3-105)||(20080142-20080245)
chr3 (3-114)||(26645096-26645207)
chr3 (3-116)||(46253692-46253803)
chr3 (60-117)||(6999297-6999354)
chr3 (1-116)||(24095294-24095409)
chr3 (64-107)||(14771493-14771536)
chr3 (60-107)||(21196251-21196298)
chr3 (1-44)||(37927165-37927208)
chr3 (60-107)||(52937310-52937357)
chr3 (60-118)||(18741243-18741301)
chr3 (3-37)||(24645426-24645460)
chr3 (3-43)||(28430799-28430839)
chr3 (1-116)||(49761375-49761490)
chr3 (1-44)||(8846559-8846602)
chr3 (1-44)||(50638311-50638354)
chr3 (1-44)||(54694073-54694116)
chr3 (61-107)||(9719345-9719391)
chr3 (4-38)||(29097520-29097554)
chr3 (3-37)||(30909099-30909133)
chr3 (3-37)||(32186106-32186140)
chr3 (3-37)||(44813414-44813448)
chr3 (3-33)||(49983323-49983353)
chr3 (3-37)||(52485543-52485577)
chr3 (3-44)||(33795685-33795726)
chr3 (60-116)||(36412250-36412307)
chr3 (1-34)||(37057027-37057060)
chr3 (1-33)||(28419185-28419217)
chr3 (1-37)||(31376732-31376768)
chr3 (2-34)||(35597231-35597263)
chr3 (4-44)||(42683898-42683938)
[»] chr7 (39 HSPs)
chr7 (1-120)||(28036812-28036931)
chr7 (3-122)||(43573425-43573544)
chr7 (1-116)||(33180598-33180713)
chr7 (1-118)||(12645796-12645913)
chr7 (3-116)||(41893985-41894098)
chr7 (2-107)||(42555633-42555738)
chr7 (3-124)||(44184439-44184560)
chr7 (1-46)||(40231664-40231709)
chr7 (3-118)||(7817706-7817821)
chr7 (1-107)||(10055529-10055635)
chr7 (3-117)||(11352861-11352975)
chr7 (1-116)||(13729794-13729909)
chr7 (1-107)||(46532570-46532677)
chr7 (1-44)||(31844565-31844608)
chr7 (1-107)||(35588788-35588894)
chr7 (3-107)||(3343227-3343331)
chr7 (3-44)||(43482593-43482634)
chr7 (1-37)||(41399130-41399166)
chr7 (1-44)||(20482595-20482638)
chr7 (1-44)||(25067291-25067334)
chr7 (3-44)||(3062400-3062441)
chr7 (4-37)||(4225823-4225856)
chr7 (60-105)||(16980423-16980468)
chr7 (6-38)||(1504326-1504358)
chr7 (5-37)||(6109938-6109970)
chr7 (59-126)||(34757348-34757416)
chr7 (1-44)||(21559866-21559909)
chr7 (1-44)||(46812865-46812908)
chr7 (61-107)||(10700083-10700129)
chr7 (3-37)||(41430118-41430152)
chr7 (1-118)||(41458664-41458781)
chr7 (61-107)||(49069372-49069418)
chr7 (1-46)||(16708228-16708273)
chr7 (1-46)||(17682464-17682509)
chr7 (3-44)||(42926209-42926250)
chr7 (1-33)||(4713641-4713673)
chr7 (1-37)||(11564961-11564997)
chr7 (1-33)||(21023088-21023120)
chr7 (61-105)||(36533856-36533900)
[»] chr2 (51 HSPs)
chr2 (3-107)||(2563774-2563878)
chr2 (1-117)||(32869894-32870010)
chr2 (3-117)||(6170700-6170814)
chr2 (3-116)||(35589275-35589388)
chr2 (3-117)||(6998955-6999069)
chr2 (3-117)||(13765470-13765584)
chr2 (3-107)||(13347711-13347816)
chr2 (5-117)||(24562904-24563016)
chr2 (3-107)||(9377526-9377630)
chr2 (3-107)||(9634333-9634437)
chr2 (3-107)||(39449337-39449441)
chr2 (60-116)||(36643972-36644028)
chr2 (3-120)||(36211944-36212061)
chr2 (60-117)||(23352794-23352851)
chr2 (61-117)||(3012739-3012795)
chr2 (1-116)||(39213658-39213773)
chr2 (60-107)||(4023247-4023294)
chr2 (60-107)||(7574562-7574609)
chr2 (1-44)||(28245796-28245839)
chr2 (1-107)||(37105706-37105812)
chr2 (1-119)||(40936949-40937067)
chr2 (3-44)||(4061922-4061963)
chr2 (3-44)||(7648460-7648501)
chr2 (1-46)||(26277163-26277208)
chr2 (3-44)||(30546330-30546371)
chr2 (2-46)||(4299281-4299325)
chr2 (2-46)||(20911870-20911914)
chr2 (1-37)||(34119619-34119655)
chr2 (1-37)||(39449084-39449120)
chr2 (3-38)||(11384981-11385016)
chr2 (1-44)||(12498596-12498639)
chr2 (1-44)||(25881612-25881655)
chr2 (60-107)||(36517323-36517370)
chr2 (1-44)||(42678817-42678860)
chr2 (1-44)||(44711949-44711992)
chr2 (61-107)||(7258458-7258504)
chr2 (3-116)||(10711794-10711907)
chr2 (3-45)||(14233678-14233720)
chr2 (2-44)||(18876881-18876923)
chr2 (60-106)||(34119550-34119596)
chr2 (1-43)||(38560746-38560788)
chr2 (1-46)||(2841902-2841947)
chr2 (3-44)||(15269931-15269972)
chr2 (3-44)||(29361090-29361131)
chr2 (1-46)||(42866818-42866863)
chr2 (1-37)||(4952447-4952483)
chr2 (2-38)||(11769095-11769131)
chr2 (3-35)||(16199681-16199713)
chr2 (1-37)||(28244207-28244243)
chr2 (60-124)||(41586548-41586612)
chr2 (1-37)||(43513480-43513516)
[»] chr8 (34 HSPs)
chr8 (3-118)||(42569615-42569730)
chr8 (3-107)||(16872053-16872157)
chr8 (3-116)||(31597018-31597131)
chr8 (3-116)||(2733057-2733171)
chr8 (3-122)||(12707219-12707339)
chr8 (3-44)||(12783835-12783876)
chr8 (2-117)||(28646741-28646857)
chr8 (2-117)||(28651325-28651441)
chr8 (1-44)||(41159849-41159892)
chr8 (3-116)||(34018878-34018991)
chr8 (59-105)||(41541983-41542029)
chr8 (1-46)||(4994449-4994494)
chr8 (3-44)||(36424562-36424603)
chr8 (60-117)||(36885375-36885432)
chr8 (1-107)||(36568026-36568135)
chr8 (1-44)||(30439466-30439509)
chr8 (1-44)||(34718183-34718226)
chr8 (1-44)||(42110143-42110186)
chr8 (60-107)||(43397700-43397747)
chr8 (3-49)||(4658218-4658264)
chr8 (3-33)||(8645234-8645264)
chr8 (3-37)||(36110208-36110242)
chr8 (59-105)||(41701292-41701338)
chr8 (4-37)||(7173279-7173312)
chr8 (3-44)||(7472986-7473027)
chr8 (3-44)||(16327112-16327153)
chr8 (3-44)||(29440483-29440524)
chr8 (3-44)||(41701232-41701273)
chr8 (2-46)||(8497627-8497671)
chr8 (71-107)||(10592206-10592242)
chr8 (1-37)||(29991480-29991516)
chr8 (60-116)||(30439394-30439450)
chr8 (2-46)||(38708253-38708297)
chr8 (1-33)||(40739883-40739915)
[»] chr4 (52 HSPs)
chr4 (3-122)||(22819719-22819838)
chr4 (3-117)||(31657716-31657830)
chr4 (3-117)||(39344867-39344981)
chr4 (3-118)||(14010004-14010119)
chr4 (1-118)||(2999180-2999297)
chr4 (60-117)||(17683468-17683525)
chr4 (3-107)||(18882872-18882976)
chr4 (3-107)||(26718438-26718542)
chr4 (3-107)||(26731066-26731170)
chr4 (3-107)||(46405871-46405975)
chr4 (1-107)||(45143570-45143674)
chr4 (1-107)||(45152339-45152443)
chr4 (1-107)||(21172348-21172454)
chr4 (4-107)||(13139219-13139321)
chr4 (60-116)||(47099147-47099203)
chr4 (1-44)||(21617251-21617294)
chr4 (3-117)||(38338809-38338923)
chr4 (1-44)||(51573592-51573635)
chr4 (1-44)||(51852144-51852187)
chr4 (1-44)||(51887731-51887774)
chr4 (60-107)||(52846126-52846173)
chr4 (61-107)||(42491202-42491248)
chr4 (61-107)||(50831652-50831698)
chr4 (3-44)||(33860716-33860757)
chr4 (60-120)||(12799841-12799901)
chr4 (5-44)||(7628101-7628139)
chr4 (64-107)||(12595527-12595570)
chr4 (1-44)||(28657401-28657444)
chr4 (1-44)||(49768278-49768321)
chr4 (3-37)||(5249939-5249973)
chr4 (3-37)||(14451463-14451497)
chr4 (3-49)||(27326707-27326753)
chr4 (3-37)||(31559609-31559643)
chr4 (61-118)||(40609742-40609800)
chr4 (3-33)||(42667275-42667305)
chr4 (3-37)||(51194339-51194373)
chr4 (1-47)||(51746288-51746334)
chr4 (3-44)||(2313281-2313322)
chr4 (3-44)||(4949575-4949616)
chr4 (3-44)||(9362639-9362680)
chr4 (4-37)||(12595597-12595630)
chr4 (3-32)||(17683294-17683323)
chr4 (3-44)||(56271430-56271471)
chr4 (1-37)||(13263364-13263400)
chr4 (1-37)||(14113580-14113616)
chr4 (1-41)||(14593896-14593936)
chr4 (4-44)||(23853805-23853845)
chr4 (1-37)||(28458344-28458380)
chr4 (3-43)||(31092579-31092619)
chr4 (79-107)||(32696685-32696713)
chr4 (1-37)||(49896633-49896669)
chr4 (3-44)||(53299255-53299298)
[»] scaffold0141 (1 HSPs)
scaffold0141 (3-117)||(12002-12116)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-117)||(11032-11148)
[»] scaffold0136 (1 HSPs)
scaffold0136 (3-117)||(38495-38609)
[»] scaffold1956 (1 HSPs)
scaffold1956 (2-46)||(839-883)
[»] scaffold0221 (1 HSPs)
scaffold0221 (3-49)||(8284-8330)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-37)||(134270-134306)
[»] scaffold0471 (1 HSPs)
scaffold0471 (3-37)||(77-111)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-46)||(41823-41868)
[»] scaffold0009 (1 HSPs)
scaffold0009 (2-46)||(62652-62695)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-41)||(223442-223482)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 46543445 - 46543263
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||          |||||||| ||||||||||||||| ||||||||||||||||    
T  46543445 attttttactttatctctctattgctttggttttcgtgcaaatatcaacttttttttt-taaattataattgtcccaaaaattatcaaccaaatggttgt 46543347  T
Q  101 tcaaatagtactcctctattataagtgaaaaagagaacaaatnnnnnnnncaacactgccaggcctcgtgaaaaagcactgacttc 186  Q
    |||||||  |||||||||| | |||||  |||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  46543346 tcaaataacactcctctatcacaagtg--aaagagaacaaataaaaaaaacaacactgccaggcctcgtgaaaaagcactgacttc 46543263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 50328142 - 50328027
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| ||||||||||| |||||||||||||||||||||    
T  50328142 tttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttc 50328043  T
Q  103 aaatagtactcctcta 118  Q
    |||||  |||||||||    
T  50328042 aaataacactcctcta 50328027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 52362550 - 52362665
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||||         |||||||||| |||||| |||| |||||||||||||||||||    
T  52362550 attttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgt 52362649  T
Q  101 tcaaatagtactcctc 116  Q
    |||||||  |||||||    
T  52362650 tcaaataacactcctc 52362665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 32915073 - 32914959
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||          |||||||||||||| |||||| ||||||||||||| |||||||    
T  32915073 tttttactttatctctctattgttttggttttcgtgcaaataccaactttttctttgtaaattatgattgttccaaaagttgtcaaccaaatagttgttc 32914974  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  32914973 aaataacactcctct 32914959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 40316945 - 40316831
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||         |||||||||| |||||| |||| |||||||||||||||||||||    
T  40316945 tttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttc 40316846  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  40316845 aaataacactcctct 40316831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 50781571 - 50781454
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||          ||||||||||||||||| |||| ||||| |||||||||||||||    
T  50781571 tttttactttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatgattgtcctaaaagttgtctaccaaatggttgttc 50781472  T
Q  103 aaatagtactcctctatt 120  Q
    |||||  |||||||||||    
T  50781471 aaataacactcctctatt 50781454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 36577413 - 36577299
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||| ||||| |||| ||||||| |||||| ||||         |||||||||| |||||| |||| |||||||||||||||||||||    
T  36577413 tttttactttatctctttattgctttgattttcgtgcaaataccaactttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttc 36577314  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  36577313 aaataacactcctct 36577299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 48326037 - 48326150
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgtt 101  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||||          ||||||||| |||| |||||| ||||||||||||||||||||    
T  48326037 ttttttactttatctctctattgctttgattttcgtacaaataccaactttttctttgtaaattatggttgt-ccaaaagttgtcaaccaaatggttgtt 48326135  T
Q  102 caaatagtactcctc 116  Q
    ||||||  |||||||    
T  48326136 caaataacactcctc 48326150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 13489732 - 13489845
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| |||||||| || ||||||||||||| |||||||    
T  13489732 tttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccagaagttgtcaaccaaatagttgttc 13489831  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  13489832 aaataacactcctc 13489845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 15705063 - 15704950
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||  |||||||||||||||||||| |||||| ||||         |||||||||| |||||| |||| || ||||||||||||||||||    
T  15705063 tttttactttatcattctattgttttggttttcgtgcaaataccaactttttctttataaattatggttgtcctaaaagttatcaaccaaatggttgttc 15704964  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  15704963 aaataacactcctc 15704950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 52714902 - 52714798
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||||||||||||||||||||||||| ||| || ||||          ||||||||  ||||||||||| ||||||| |||||||||||||    
T  52714902 tttttactttatctctctattgttttggttttcgtgcaattaccaactttttctttgtaaattattgttgtcccaaaagttgtcaatcaaatggttgttc 52714803  T
Q  103 aaata 107  Q
    |||||    
T  52714802 aaata 52714798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3226063 - 3226019
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatat 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  3226063 attttttactttatctctctattgctttggttttcgtacaaatat 3226019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 8447804 - 8447919
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||          ||||||||||||||| || || || ||||| ||||| ||||    
T  8447804 attttttactttatctctctattgttttagtttttgtgcaaatatcaactttttctttgtaaattatgattgtcacataagttatcaactaaatgattgt 8447903  T
Q  101 tcaaatagtactcctc 116  Q
    |||||||  |||||||    
T  8447904 tcaaataacactcctc 8447919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 15015466 - 15015571
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||| |||||||||||||||||||||| |||||| ||||          ||||||||| ||||||| | |||| |||||||||| |||||    
T  15015466 attttttactttatatctctattgttttggttttcgtgcaaataccaactttttctttgtaaattatggttgtccc-ataattatcaaccaaatagttgt 15015564  T
Q  101 tcaaata 107  Q
    |||||||    
T  15015565 tcaaata 15015571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 10890047 - 10889934
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| || ||| ||||          ||||||||| ||||| ||||| ||||||||||||| |||||||    
T  10890047 tttttactttatctctctattgctttgattttcgtgcacataccaactttttctttgtaaattatggttgtcacaaaagttgtcaaccaaatagttgttc 10889948  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  10889947 aaataacactcctc 10889934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 35136914 - 35137027
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| |||| || ||||||  |||          ||||||||| |||||| ||||||||||||||||||| ||||||    
T  35136914 tttttactttatctctctattgctttgatttttgtgcaaatacaaactttttctttgtaaattatggttgtcctaaaaattgtcaaccaaatgattgttc 35137013  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  35137014 aaataacactcctc 35137027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 50882055 - 50881997
Alignment:
Q  59 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 117  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||||  ||||||||    
T  50882055 ataaattatgattgtcacataaattgtcaatcaaatggttgttcaaataacactcctct 50881997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 51571289 - 51571243
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  51571289 aaattatggttgtcccaaaaattgtcaatcaaatggttgttcaaata 51571243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 29147875 - 29147833
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatat 45  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  29147875 tttttactttatctctctattgttttggtttccgtgcaaatat 29147833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 33358160 - 33358055
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgtt 101  Q
    |||||||||||||||||| |||| |||| ||||||| |||||| | ||          ||||||||| ||||| || || ||||||||||||||||||||    
T  33358160 ttttttactttatctctcaattgatttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgtt 33358061  T
Q  102 caaata 107  Q
    ||||||    
T  33358060 caaata 33358055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 34254352 - 34254239
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||| ||||| |||||||||||| ||||||  |||          ||||||||  ||||||||||| || ||||||||||| ||||||    
T  34254352 tttttactttatctctttattgctttggttttcgtgcaaatacaaactttttctttgtaaattatagttgtcccaaaagttatcaaccaaatgattgttc 34254253  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  34254252 aaataacactcctc 34254239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 29154905 - 29154962
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 117  Q
    ||||||||  |||||||| || ||||||||||||||||||||||||||  ||||||||    
T  29154905 taaattatcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcctct 29154962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 51466837 - 51466878
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  51466837 tttttactttatctctctattgttttgatttccgtacaaata 51466878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8411721 - 8411689
Alignment:
Q  1 attttttactttatctctctattgttttggttt 33  Q
    |||||||||||||||||||||||||||||||||    
T  8411721 attttttactttatctctctattgttttggttt 8411689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4608220 - 4608263
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||| ||| |||| ||||||||||||||||||||||||||    
T  4608220 attttttaatttttctcactattgttttggttttcgtacaaata 4608263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 7101631 - 7101584
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||||||||| | ||| ||||||| ||||||||||||||||||    
T  7101631 taaattatgattgtctctaaagttgtcaatcaaatggttgttcaaata 7101584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 11597707 - 11597750
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||| |||||||||||||||||||||||| | ||||||    
T  11597707 tttttactttctctctctattgttttggttttcgtgctaatatc 11597750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 19969496 - 19969457
Alignment:
Q  82 ttgtcaaccaaatggttgttcaaatagtactcctctatta 121  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  19969496 ttgtcaaccaaatggttgttcaaataacactcctctatta 19969457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35539276 - 35539233
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||    
T  35539276 attttttactttatctctctgttgttttggtttccgtgcaaata 35539233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45417840 - 45417883
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||    
T  45417840 attttttaatttatctctctattgttttgattttcgtgcaaata 45417883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 19969563 - 19969529
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  19969563 tttttactttatctctctattgctttggttttcgt 19969529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 29418791 - 29418757
Alignment:
Q  4 ttttactttatctctctattgttttggttttcgta 38  Q
    |||||||||||||||||||| ||||||||||||||    
T  29418791 ttttactttatctctctattattttggttttcgta 29418757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 30745058 - 30745088
Alignment:
Q  4 ttttactttatctctctattgttttggtttt 34  Q
    |||||||||||||||||||||||||||||||    
T  30745058 ttttactttatctctctattgttttggtttt 30745088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 30766509 - 30766539
Alignment:
Q  4 ttttactttatctctctattgttttggtttt 34  Q
    |||||||||||||||||||||||||||||||    
T  30766509 ttttactttatctctctattgttttggtttt 30766539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 50824809 - 50824843
Alignment:
Q  1 attttttactttatctctctattgttttggttttc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  50824809 attttttactttatctctctattgctttggttttc 50824843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 44723431 - 44723472
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||| ||| |||||||||||||||||||| ||||    
T  44723431 tttttactttatttctttattgttttggttttcgtaccaata 44723472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8200143 - 8200179
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  8200143 attttttactttatccctctattgctttggttttcgt 8200179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 8200202 - 8200258
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 116  Q
    ||||||||| |||||||| || |||||||||||| || ||||||||||  |||||||    
T  8200202 taaattatggttgtcccataagttgtcaaccaaaaggctgttcaaataacactcctc 8200258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 29877370 - 29877402
Alignment:
Q  5 tttactttatctctctattgttttggttttcgt 37  Q
    |||||||| ||||||||||||||||||||||||    
T  29877370 tttactttctctctctattgttttggttttcgt 29877402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 34040432 - 34040396
Alignment:
Q  70 ttgtcccaaaaattgtcaaccaaatggttgttcaaat 106  Q
    |||||||||||||| |||| |||||||||||||||||    
T  34040432 ttgtcccaaaaattatcaatcaaatggttgttcaaat 34040396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34040503 - 34040459
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatat 45  Q
    |||||||||||||||||||||||  |||| ||||||| |||||||    
T  34040503 attttttactttatctctctattactttgattttcgtgcaaatat 34040459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37588678 - 37588642
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  37588678 attttttactttatctctctattgctttgattttcgt 37588642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44294083 - 44294127
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatat 45  Q
    |||||||||||||| |||| ||||||||| ||||||| |||||||    
T  44294083 attttttactttatttctcaattgttttgattttcgtgcaaatat 44294127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44789146 - 44789110
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  44789146 attttttactttatctctctattgctttgattttcgt 44789110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46911361 - 46911397
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  46911361 attttttactttatctctctattgctttgattttcgt 46911397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47214276 - 47214308
Alignment:
Q  1 attttttactttatctctctattgttttggttt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  47214276 attttttactttatctctctattgttatggttt 47214308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47721477 - 47721513
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  47721477 attttttactttatctctctattgctttgattttcgt 47721513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47728469 - 47728505
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  47728469 attttttactttatctctctattgctttgattttcgt 47728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 51436772 - 51436740
Alignment:
Q  3 tttttactttatctctctattgttttggttttc 35  Q
    |||||||||||||||| ||||||||||||||||    
T  51436772 tttttactttatctctttattgttttggttttc 51436740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 189704 - 189585
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||         |||||||||||||||||||||| |||||||||||||| ||||||    
T  189704 tttttactttatctctctattgctttggttttcgtgcaaatatcaactttttctttataaattatgattgtcccaaaagttgtcaaccaaatgattgttc 189605  T
Q  103 aaatagtactcctctattat 122  Q
    |||||  |||||||| ||||    
T  189604 aaataacactcctcttttat 189585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 15478726 - 15478841
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||          ||||||||| |||| |||||||||||||||||||| |||||    
T  15478726 attttttactttatctctcaattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgttccaaaaattgtcaaccaaatagttgt 15478825  T
Q  101 tcaaatagtactcctc 116  Q
    |||||||  |||||||    
T  15478826 tcaaataacactcctc 15478841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 32912108 - 32912221
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||| | ||||||||||||||||||||  ||||| ||||         |||||||||||||||||||||| |||||||||||||||||||||    
T  32912108 tttttactttatttatctattgttttggttttcgtgtaaataccaactttttctttataaattatgattgtcccaaaagttgtcaaccaaatggttgttc 32912207  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  32912208 aaataacactcctc 32912221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 8675434 - 8675321
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| |||||| ||||          ||||||||| ||||||||||| |||||||||||||||||||||    
T  8675434 tttttactttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttc 8675335  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  8675334 aaataacactcctc 8675321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 43441808 - 43441925
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||           ||||||||| |||||  |||| |||||||||||||||||||||    
T  43441808 tttttactttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaaattatggttgtcttaaaagttgtcaaccaaatggttgttc 43441907  T
Q  103 aaatagtactcctctatt 120  Q
    |||||  |||||||||||    
T  43441908 aaataacactcctctatt 43441925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 10649505 - 10649619
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| || ||| ||||          ||||||||| ||||| ||||| |||||||||||||||||||||    
T  10649505 tttttactttatctctctattgctttgattttcgtgcacataccaactttttctttgtaaattatggttgtcacaaaagttgtcaaccaaatggttgttc 10649604  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  10649605 aaataacactcctct 10649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 19481183 - 19481069
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||          ||||||||  ||||||||||| || ||||||||||| ||||||    
T  19481183 tttttactttatctctctattgttttggtcttcgtgcaaataccaactttttctttgtaaattatagttgtcccaaaagttatcaaccaaatgattgttc 19481084  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  19481083 aaataacactcctct 19481069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 19839989 - 19839883
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||||           ||||||||| ||||||||||| || |||||||||| |||||    
T  19839989 attttttactttatatctctattgctttggttttcgtgcaaatatcaattttttctttgtaaattatggttgtcccaaaagttatcaaccaaatagttgt 19839890  T
Q  101 tcaaata 107  Q
    |||||||    
T  19839889 tcaaata 19839883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 34270395 - 34270510
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||| |||  ||||||||||| |||||| | ||          ||||||||| ||||| ||||| |||||||||||||||||||    
T  34270395 attttttactttatctctctgttgcattggttttcgtgcaaatacctacttttcctttgtaaattatggttgtctcaaaatttgtcaaccaaatggttgt 34270494  T
Q  101 tcaaatagtactcctc 116  Q
    |||||||  |||||||    
T  34270495 tcaaataacactcctc 34270510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 1839348 - 1839242
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| |           ||||||||| |||||||| ||||| |||||||||||| | |    
T  1839348 attttttactttatctttctattgttttggttttcgtgcaaatatctattttttctttgtaaattatggttgtcccataaattatcaaccaaatggcttt 1839249  T
Q  101 tcaaata 107  Q
    |||||||    
T  1839248 tcaaata 1839242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 15953048 - 15952942
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||| ||||||| |||||| | ||          ||||||||| ||||| || || |||||||||||||||||||    
T  15953048 attttttactttatctctctattgctttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgt 15952949  T
Q  101 tcaaata 107  Q
    |||||||    
T  15952948 tcaaata 15952942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 41175709 - 41175593
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||| | ||||| |||||| | ||          ||||||||| ||||| || || |||||||||||||||||||    
T  41175709 attttttactttatctctctattgctttgatcttcgtgcaaatacccactttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgt 41175610  T
Q  101 tcaaatagtactcctct 117  Q
    |||||||  ||||||||    
T  41175609 tcaaataacactcctct 41175593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6292189 - 6292232
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  6292189 attttttactttatctctctattattttgattttcgtacaaata 6292232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9581647 - 9581690
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||    
T  9581647 attttttactttatctctctattgttttggtttccgtgcaaata 9581690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 15008553 - 15008447
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||| ||          |||||||| |||||| || || |||||||||||||  ||||    
T  15008553 atttattattttatctctctattgttttggttttcgtgcaaatatctacttttcttttgtaaattattattgtcacataagttgtcaaccaaataattgt 15008454  T
Q  101 tcaaata 107  Q
    |||||||    
T  15008453 tcaaata 15008447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30640858 - 30640901
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  30640858 attttttactttatctctctattgctttgattttcgtacaaata 30640901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 38704200 - 38704094
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||| | ||||||| |||| ||||||| |||||| ||||          ||||||||| ||||||||||| |||| || |||||||||||    
T  38704200 attttttactttatttttctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgttaatcaaatggttgt 38704101  T
Q  101 tcaaata 107  Q
    |||||||    
T  38704100 tcaaata 38704094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 189566 - 189516
Alignment:
Q  72 gtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctattat 122  Q
    |||||||||||||||||||||||| |||||||||||  |||||||| ||||    
T  189566 gtcccaaaaattgtcaaccaaatgattgttcaaataacactcctcttttat 189516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 6517782 - 6517828
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaac 49  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||    
T  6517782 tttttactttatctctctattgctttggttttcgtgcaaataccaac 6517828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 10659099 - 10658991
Alignment:
Q  8 actttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||||||||||| |||||||||||| |||||||| |          |||||||| | |||| |||||| ||||||| ||||||||||||||||||    
T  10659099 actttatctctctattgctttggttttcgtgcaaatatcta-tttttctttataaattacggttgtgccaaaagttgtcaatcaaatggttgttcaaata 10659001  T
Q  108 gtactcctct 117  Q
      ||||||||    
T  10659000 acactcctct 10658991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 34124691 - 34124804
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||| ||||||||| ||||||||||||  ||||| ||||          ||||||||| |||||  ||||||||||||  ||||||||||||    
T  34124691 tttttactttatttctctattgctttggttttcgtgtaaataccaactttttctttgtaaattatggttgtcttaaaaattgtcaattaaatggttgttc 34124790  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  34124791 aaataacactcctc 34124804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 43214060 - 43213947
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||| |||||||||||||||||| |||||| | |          |||||||||  ||||   |||| |||||||||||||||||||||    
T  43214060 tttttactttatctctttattgttttggttttcgtgcaaatacctattttttctttataaattatagttgttttaaaagttgtcaaccaaatggttgttc 43213961  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  43213960 aaataacactcctc 43213947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21136331 - 21136364
Alignment:
Q  1 attttttactttatctctctattgttttggtttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21136331 attttttactttatctctctattgttttggtttt 21136364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 34888810 - 34888769
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  34888810 tttttactttatctctctattgttttgatttccgtacaaata 34888769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15267852 - 15267888
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15267852 attttttactttatctctctattgttatggttttcgt 15267888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 6446462 - 6446415
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||| |||| | |||||||||||||||||| ||||||||||||    
T  6446462 taaattatggttgttcaaaaaattgtcaaccaaattgttgttcaaata 6446415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 43196628 - 43196585
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||    
T  43196628 attttttactttatctctctattgctttgattttcgtgcaaata 43196585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 9226370 - 9226475
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaa-tggttgtt 101  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||   ||          |||||||| |||||| ||||| |||||||||||| ||||||||    
T  9226370 tttttactttatctctctattgttttgatttccgtgcaaatacttactttttctttgtaaattataattgtcacaaaagttgtcaaccaaattggttgtt 9226469  T
Q  102 caaata 107  Q
    ||||||    
T  9226470 caaata 9226475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 21353272 - 21353318
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||| ||||||||||| ||||||| |||||||||||| |||||    
T  21353272 aaattatggttgtcccaaaagttgtcaatcaaatggttgtttaaata 21353318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 6446519 - 6446478
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||| ||||||||| ||| |||||||||||||||    
T  6446519 tttttactttatttctctattgcttttgttttcgtacaaata 6446478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 18397166 - 18397125
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  18397166 tttttattttatctctctattgctttggttttcgtgcaaata 18397125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4430939 - 4430903
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  4430939 attttttactttatctctctattgctatggttttcgt 4430903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 14051317 - 14051285
Alignment:
Q  2 ttttttactttatctctctattgttttggtttt 34  Q
    ||||||||||| |||||||||||||||||||||    
T  14051317 ttttttactttctctctctattgttttggtttt 14051285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18842324 - 18842288
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  18842324 attttttactttatctctctattgctatggttttcgt 18842288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20770199 - 20770235
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  20770199 attttttactttatctctctattgctttgattttcgt 20770235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 35213562 - 35213448
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||          ||||||||||||||||||||| |||||||||||||||||||||    
T  35213562 tttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatgattgtcccaaaagttgtcaaccaaatggttgttc 35213463  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  35213462 aaataacactcctct 35213448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 754439 - 754325
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| |||| ||||||||||||||||||||||||||||    
T  754439 tttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgttccaaaaattgtcaaccaaatggttgttc 754340  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  754339 aaataacactcctct 754325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 1369430 - 1369534
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| |||||| ||||          ||||||||| ||||| |||||||||||||||||||||||||||    
T  1369430 tttttactttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtctcaaaaattgtcaaccaaatggttgttc 1369529  T
Q  103 aaata 107  Q
    |||||    
T  1369530 aaata 1369534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 32046766 - 32046872
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    ||||||||||||||||||||||||| |||| ||| || |||||| ||||         |||||||||| |||||||| || |||||||||||||||||||    
T  32046766 attttttactttatctctctattgtgttggattttgtgcaaataacaactttttctttataaattatggttgtcccataagttgtcaaccaaatggttgt 32046865  T
Q  101 tcaaata 107  Q
    |||||||    
T  32046866 tcaaata 32046872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 13143383 - 13143270
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| ||||||  |||          ||||||||| ||||||||||| |||||||||||||||||||||    
T  13143383 tttttactttatctctctattgctttgattttcgtgcaaatacaaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttc 13143284  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  13143283 aaataacactcctc 13143270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 18141302 - 18141186
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| || ||| ||||          ||||||||| ||||| ||||| |||||||||||||||||||||    
T  18141302 tttttactttatctctctattgctttgattttcgtgcacataccaacttattctttgtaaattatggttgtcacaaaagttgtcaaccaaatggttgttc 18141203  T
Q  103 aaatagtactcctctat 119  Q
    |||||  ||||||||||    
T  18141202 aaataacactcctctat 18141186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 20822869 - 20822766
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||          |||||||||| |||||| |||| |||||||||||||||||||||    
T  20822869 tttttactttatctctctattgctttggttttcgtgcaaataccaa-tatttttttataaattatggttgtcctaaaagttgtcaaccaaatggttgttc 20822771  T
Q  103 aaata 107  Q
    |||||    
T  20822770 aaata 20822766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 32459518 - 32459403
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgtt 101  Q
    ||||||||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| |||||| |||| ||||||| ||||| ||||||    
T  32459518 ttttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcctaaaagttgtcaatcaaattgttgtt 32459419  T
Q  102 caaatagtactcctct 117  Q
    ||||||  ||||||||    
T  32459418 caaataacactcctct 32459403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26832714 - 26832757
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  26832714 attttttactttatctctctattgttttggttttcgtgcaaata 26832757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 868955 - 868912
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  868955 attttttactttatctctctattgatttggtttttgtacaaata 868912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 2943502 - 2943608
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||| ||         ||||| |||| ||||   | ||||||| ||||||||||||||    
T  2943502 attttttactttatttctctattattttggttttcgtgcaaatatctactttttctttataaaatatggttgttttataaattgttaaccaaatggttgt 2943601  T
Q  101 tcaaata 107  Q
    |||||||    
T  2943602 tcaaata 2943608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 2689066 - 2688961
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaa-tggttgtt 101  Q
    |||||||||||||||||||||||||||||||  || |||||| | ||         |||||||||| ||||| ||||| |||||||||||| || |||||    
T  2689066 tttttactttatctctctattgttttggtttatgtgcaaatacctactttttctttataaattatggttgtcacaaaagttgtcaaccaaattgattgtt 2688967  T
Q  102 caaata 107  Q
    ||||||    
T  2688966 caaata 2688961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 31883246 - 31883200
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  31883246 aaattatggttgtcccaaaaattgtcaatcaaatagttgttcaaata 31883200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 3832590 - 3832646
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 116  Q
    ||||||||| |||||||| || ||||||| ||||||||||||||||||  |||||||    
T  3832590 taaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcctc 3832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14699667 - 14699624
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||    
T  14699667 attttttactttatctctctgttgctttggttttcgtgcaaata 14699624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 17551379 - 17551348
Alignment:
Q  3 tttttactttatctctctattgttttggtttt 34  Q
    ||||||||||||||||||||||||||||||||    
T  17551379 tttttactttatctctctattgttttggtttt 17551348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 23628429 - 23628472
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||    
T  23628429 tttttactttatctctctattattttggtttccgtgcaaatatc 23628472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28944982 - 28944939
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||| ||||||||| |||| ||||||||||||||    
T  28944982 attttttactttatttctctattgctttgattttcgtacaaata 28944939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 6856102 - 6856060
Alignment:
Q  65 tatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||| ||||| || |||||||||||||||||||||||||||||    
T  6856102 tatgtttgtctcataaattgtcaaccaaatggttgttcaaata 6856060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 6531124 - 6531067
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 117  Q
    ||||||||| ||||||||  | || |||||||||||||||||||||||  ||||||||    
T  6531124 taaattatggttgtcccattagttatcaaccaaatggttgttcaaataacactcctct 6531067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 24842437 - 24842478
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||    
T  24842437 tttttactttatctctctatttttttggtttccgtgcaaata 24842478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 34037048 - 34037089
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||| |||||||||| ||||||| ||||||    
T  34037048 tttttactttatctctttattgttttgattttcgtgcaaata 34037089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 31749434 - 31749478
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||||||||||||||||||||  |||||||  |||||||    
T  31749434 ttttttactttatctctctattgttttaattttcgtgtaaatatc 31749478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33421828 - 33421864
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  33421828 attttttactttatctctctattgctttgattttcgt 33421864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 46852133 - 46852020
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||          ||||||||||||||||||||| |||||||||||||||||||||    
T  46852133 tttttactttatttgtctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatgattgtcccaaaagttgtcaaccaaatggttgttc 46852034  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  46852033 aaataacactcctc 46852020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 3953476 - 3953362
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||| ||||||||||||| |||||||||| | |||||||||||         |||||||||||||||| |||||||||||||||||||| ||||||    
T  3953476 tttttactctatctctctattgctttggttttcatgcaaatatcaactttttctttataaattatgattgtctcaaaaattgtcaaccaaatgattgttc 3953377  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  3953376 aaataacactcctct 3953362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 21005177 - 21005062
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||||||| |||| ||| |||||||| |||||||||||         |||||||||||||||||||||| || |||||||||||||| |||    
T  21005177 tttttactttatctctcaattgctttagttttcgtgcaaatatcaactttttctttataaattatgattgtcccaaaagttatcaaccaaatggttcttc 21005078  T
Q  103 aaatagtactcctcta 118  Q
    |||||  |||||||||    
T  21005077 aaatatcactcctcta 21005062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 51465915 - 51465801
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| |||||| ||||          ||||||||| ||||||||||| |||||||||||||||||||||    
T  51465915 tttttactttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttc 51465816  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  51465815 aaataacactcctct 51465801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 55400069 - 55400183
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||          |||||||||| |||||| |||| |||||||||||||||||||||    
T  55400069 tttttactttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttc 55400168  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  55400169 aaataacactcctct 55400183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 24482964 - 24482850
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||          ||| ||||| ||||||||||| |||| ||||||||||||||||    
T  24482964 tttttactttatctctatattgttttggttttcgtgcaaataccaactttttctttgtaagttatggttgtcccaaaagttgtaaaccaaatggttgttc 24482865  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  24482864 aaataacactcctct 24482850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 50206971 - 50206857
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||          ||||||||| |||||| |||| |||||||| |||| ||||||     
T  50206971 tttttactttatctctctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgtcctaaaagttgtcaactaaatagttgttt 50206872  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  50206871 aaataacactcctct 50206857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 39697223 - 39697119
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||           ||||||||| ||||||||||| ||||||| ||||| |||||||    
T  39697223 tttttactttatctctctattgctttggttttcgtgcaaatatcaattttttctttgtaaattatggttgtcccaaaagttgtcaatcaaatagttgttc 39697124  T
Q  103 aaata 107  Q
    |||||    
T  39697123 aaata 39697119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 46019532 - 46019636
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| ||||||||||||||||||| | |           ||||||||| |||| |||||| |||||||||||||||||||||    
T  46019532 tttttactttatctctctattgctttggttttcgtacaaatacctatcttttctttgtaaattatggttgttccaaaagttgtcaaccaaatggttgttc 46019631  T
Q  103 aaata 107  Q
    |||||    
T  46019632 aaata 46019636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 20080142 - 20080245
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaa-tggttgtt 101  Q
    ||||||||||||||||||||||||||||||| ||| |||||| | ||         |||||||||| ||||| |||||||| ||||||||| ||||||||    
T  20080142 tttttactttatctctctattgttttggtttccgtgcaaatacctactttttctttataaattatggttgtcacaaaaattatcaaccaaattggttgtt 20080241  T
Q  102 caaa 105  Q
    ||||    
T  20080242 caaa 20080245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 26645096 - 26645207
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||| ||||||||| |||||||||| | |||||||| ||          |||||||||||| ||||| ||||||||| |||||| |||||||    
T  26645096 tttttactttatttctctattgctttggttttcatgcaaatatctactttttctttgtaaattatgattatcccataaattgtcatccaaatagttgttc 26645195  T
Q  103 aaatagtactcc 114  Q
    ||||| ||||||    
T  26645196 aaataatactcc 26645207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 46253692 - 46253803
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| ||||||||||| ||||||| |  ||||||||||    
T  46253692 tttttactttatctctctattgctttggttttcgtgcaaataccaacattttctttgtaaattatggttgtcccaaaagttgtcaatc--atggttgttc 46253789  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  46253790 aaataacactcctc 46253803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 6999297 - 6999354
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 117  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||  ||||||||    
T  6999297 taaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctct 6999354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 24095409 - 24095294
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||| ||||||||| |||||||||||| |||||| | ||          ||||||||| |||||  |||| ||||||||||||||| |||    
T  24095409 attttttactttatttctctattgctttggttttcgtgcaaatacctactttttctttgtaaattatggttgtcataaaagttgtcaaccaaatggatgt 24095310  T
Q  101 tcaaatagtactcctc 116  Q
    |||||||  |||||||    
T  24095309 tcaaataacactcctc 24095294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 14771536 - 14771493
Alignment:
Q  64 ttatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||    
T  14771536 ttatgattgtcccaaaaattgtcaaacaaatggttattcaaata 14771493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 21196251 - 21196298
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  21196251 taaattatgattatcccataaattgtcaatcaaatggttgttcaaata 21196298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37927208 - 37927165
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  37927208 attttttactttatctctctattgctttggtttccgtacaaata 37927165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 52937310 - 52937357
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  52937310 taaattatggttgtctcaaaaattatcaaccaaatggttgttcaaata 52937357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 18741243 - 18741301
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctcta 118  Q
    ||||||||| |||||||| ||||| || ||||||||||||||||||||| | |||||||    
T  18741243 taaattatggttgtcccataaattatccaccaaatggttgttcaaatagcaatcctcta 18741301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 24645426 - 24645460
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||||||||||||||    
T  24645426 tttttactttatctctctattgttttggttttcgt 24645460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 28430799 - 28430839
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaat 43  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  28430799 tttttactttatttctctattgttttggtttttgtacaaat 28430839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 49761375 - 49761490
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| ||||||||| || |||||| | ||         ||||||||||||||||    || |||||||| ||||| ||||    
T  49761375 attttttactttatctctctattgctttggtttttgtgcaaatacctactttttctttataaattatgattgtcatgtaagttgtcaactaaatgattgt 49761474  T
Q  101 tcaaatagtactcctc 116  Q
    |||||||  |||||||    
T  49761475 tcaaataacactcctc 49761490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8846559 - 8846602
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||| |||||||||||||  |||||||||    
T  8846559 attttttactttatctctccattgttttggtttctgtacaaata 8846602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50638354 - 50638311
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||    
T  50638354 attttttactttatctctctattgctttggtttccgtgcaaata 50638311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 54694116 - 54694073
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||    
T  54694116 attttttactttatctctctattgctttgattttcgtgcaaata 54694073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 9719391 - 9719345
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||| || |||||||| ||||||| ||||||||||||||||||    
T  9719391 aaattatggttatcccaaaagttgtcaatcaaatggttgttcaaata 9719345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 29097554 - 29097520
Alignment:
Q  4 ttttactttatctctctattgttttggttttcgta 38  Q
    |||||||| ||||||||||||||||||||||||||    
T  29097554 ttttacttcatctctctattgttttggttttcgta 29097520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 30909099 - 30909133
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  30909099 tttttactttatctctctattgttatggttttcgt 30909133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 32186106 - 32186140
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||| ||||||||||||||||||||||    
T  32186106 tttttactttatttctctattgttttggttttcgt 32186140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 44813448 - 44813414
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  44813448 tttttactttatctctctattgctttggttttcgt 44813414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 49983353 - 49983323
Alignment:
Q  3 tttttactttatctctctattgttttggttt 33  Q
    |||||||||||||||||||||||||||||||    
T  49983353 tttttactttatctctctattgttttggttt 49983323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 52485543 - 52485577
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  52485543 tttttactttatctctctattgctttggttttcgt 52485577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 33795726 - 33795685
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||| ||| |||| |||||    
T  33795726 tttttactttatctctctattgttttgttttccgtataaata 33795685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 36412250 - 36412307
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaa-ccaaatggttgttcaaatagtactcctc 116  Q
    ||||||||| |||||||| || ||||||| |||||||||||||||||||  |||||||    
T  36412250 taaattatggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcctc 36412307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37057060 - 37057027
Alignment:
Q  1 attttttactttatctctctattgttttggtttt 34  Q
    |||||||||||||||||||||||||||| |||||    
T  37057060 attttttactttatctctctattgtttttgtttt 37057027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28419217 - 28419185
Alignment:
Q  1 attttttactttatctctctattgttttggttt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  28419217 attttttactttatctctctattgttatggttt 28419185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31376768 - 31376732
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  31376768 attttttactttatctctctattgctttgattttcgt 31376732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 35597231 - 35597263
Alignment:
Q  2 ttttttactttatctctctattgttttggtttt 34  Q
    ||||||||||| |||||||||||||||||||||    
T  35597231 ttttttactttctctctctattgttttggtttt 35597263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 42683898 - 42683938
Alignment:
Q  4 ttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||| |||| ||||||| ||||||    
T  42683898 ttttactttatctctctattgctttgattttcgtgcaaata 42683938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 28036812 - 28036931
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||||          ||||||||| ||||||||||| |||||||||||||||||||    
T  28036812 attttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgt 28036911  T
Q  101 tcaaatagtactcctctatt 120  Q
    |||| ||  |||||||||||    
T  28036912 tcaattaacactcctctatt 28036931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 43573544 - 43573425
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||          |||||||||| ||||| |||||||||||||||||||| ||||||    
T  43573544 tttttactttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtctcaaaaattgtcaaccaaatgattgttc 43573445  T
Q  103 aaatagtactcctctattat 122  Q
    |||||  |||||||||||||    
T  43573444 aaataacactcctctattat 43573425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 33180713 - 33180598
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||   |          ||||||||| |||||| || || |||||||||||||||||||    
T  33180713 attttttactttatctctctattgttttggttttcgtgcaaatacataatttctctttataaattatcattgtctcataagttgtcaaccaaatggttgt 33180614  T
Q  101 tcaaatagtactcctc 116  Q
    ||||||| ||||||||    
T  33180613 tcaaataatactcctc 33180598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 12645913 - 12645796
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||          ||||||||| || || ||||| ||||||||||||| |||||    
T  12645913 attttttactttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttatctcaaaagttgtcaaccaaatagttgt 12645814  T
Q  101 tcaaatagtactcctcta 118  Q
    |||||||  |||||||||    
T  12645813 tcaaatatcactcctcta 12645796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 41893985 - 41894098
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||| |||||||||||||||| || ||| ||||          ||||||||| ||||| |||||||||||||| ||||||||||||    
T  41893985 tttttactttatctctctgttgttttggttttcgtgcatataccaacttttcctttgtaaattatggttgtcacaaaaattgtcaactaaatggttgttc 41894084  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  41894085 aaataacactcctc 41894098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 42555633 - 42555738
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgtt 101  Q
    |||||||||||||||||||||||  |||||||||||||||||  | ||         |||||||||| ||||| ||||| ||||||||||||||||||||    
T  42555633 ttttttactttatctctctattgcattggttttcgtacaaatgcctacttttcctttataaattatggttgtctcaaaagttgtcaaccaaatggttgtt 42555732  T
Q  102 caaata 107  Q
    ||||||    
T  42555733 caaata 42555738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 44184560 - 44184439
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| | |           ||||||||| |||| |||||| |||||||||||||||||||||    
T  44184560 tttttactttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaaattatggttgttccaaaagttgtcaaccaaatggttgttc 44184461  T
Q  103 aaatagtactcctctattataa 124  Q
    ||||| |||| |||| ||||||    
T  44184460 aaataatactactcttttataa 44184439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40231709 - 40231664
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40231709 attttttactttatctctctattgttttggttttcgtacaaatatc 40231664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 7817706 - 7817821
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| |||||||| ||          ||||||||| ||||| || || |||||||||||||||||||||    
T  7817706 tttttactttatctctctattgctttgattttcgtgcaaatatccactttttctttgtaaattatggttgtcacataagttgtcaaccaaatggttgttc 7817805  T
Q  103 aaatagtactcctcta 118  Q
    |||||  |||||||||    
T  7817806 aaataacactcctcta 7817821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10055635 - 10055529
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||          ||||||||  |||||||| || |||||||||||||||||||    
T  10055635 attttttactttatctctctattgctttggtttttgtacaaataccaactttttctttgtaaattatagttgtcccataagttgtcaaccaaatggttgt 10055536  T
Q  101 tcaaata 107  Q
    | |||||    
T  10055535 ttaaata 10055529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 11352975 - 11352861
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||| ||||| ||||||||||||  ||||| |||           ||||||||| ||||||||||| |||||||||||||||||||||    
T  11352975 tttttactttatctctttattgctttggttttcgtgtaaataccaaatttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttc 11352876  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  11352875 aaataacactcctct 11352861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 13729794 - 13729909
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    ||||||||||||||||||||||||  ||||||||||| |||||| |||           ||||||||| ||||||||||| ||||||||||||||||||     
T  13729794 attttttactttatctctctattgcgttggttttcgtgcaaataccaattttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgc 13729893  T
Q  101 tcaaatagtactcctc 116  Q
    | |||||  |||||||    
T  13729894 tgaaataacactcctc 13729909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 46532570 - 46532677
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaa-tggttg 99  Q
    |||||||||||||||||||||||||||||||||||||  ||||| | |          |||||||||| ||||| ||||| |||||||||||| ||||||    
T  46532570 attttttactttatctctctattgttttggttttcgtgtaaatacctaatttttctttataaattatggttgtcacaaaagttgtcaaccaaattggttg 46532669  T
Q  100 ttcaaata 107  Q
    ||||||||    
T  46532670 ttcaaata 46532677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31844608 - 31844565
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  31844608 attttttactttatctctctattgttttggtttttgtacaaata 31844565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 35588894 - 35588788
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||| ||||||| |||||| ||||          |||||||| |||||| |||||||| ||||  ||||||||||    
T  35588894 attttttactttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattataattgtctcaaaaattatcaattaaatggttgt 35588795  T
Q  101 tcaaata 107  Q
    |||||||    
T  35588794 tcaaata 35588788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 3343331 - 3343227
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||  ||||         |||||||||| |||||  |||| ||||||| ||||| |||||||    
T  3343331 tttttactttatctctctattgctttggttttcgtgcaaatcccaactttttctttataaattatggttgtcttaaaagttgtcaatcaaatagttgttc 3343232  T
Q  103 aaata 107  Q
    |||||    
T  3343231 aaata 3343227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 43482593 - 43482634
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  43482593 tttttactttatctctctattgttttggttttcgtgcaaata 43482634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41399166 - 41399130
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  41399166 attttttactttatctctctattgttttggttttcgt 41399130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20482595 - 20482638
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  20482595 attttttactttatctctctattgttttggtttatgtacaaata 20482638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25067291 - 25067334
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  25067291 attttttactttatctctctattgttttggttttcatgcaaata 25067334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 3062400 - 3062441
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  3062400 tttttactttatctctctattgttttggtttttgtgcaaata 3062441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 4225823 - 4225856
Alignment:
Q  4 ttttactttatctctctattgttttggttttcgt 37  Q
    ||||||||||||||||||||||||||||||||||    
T  4225823 ttttactttatctctctattgttttggttttcgt 4225856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 16980423 - 16980468
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaa 105  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||    
T  16980423 taaattatgattgtctcaaaagttgtcaactaaatggttgttcaaa 16980468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 1504358 - 1504326
Alignment:
Q  6 ttactttatctctctattgttttggttttcgta 38  Q
    |||||||||||||||||||||||||||||||||    
T  1504358 ttactttatctctctattgttttggttttcgta 1504326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 6109970 - 6109938
Alignment:
Q  5 tttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||||||||||||    
T  6109970 tttactttatctctctattgttttggttttcgt 6109938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 34757416 - 34757348
Alignment:
Q  59 ataaattatgattgtcccaaaaattgtcaaccaaa-tggttgttcaaatagtactcctctattataagt 126  Q
    |||||||||| ||||| ||||| |||||||||||| ||||||||||||||  ||||||| || ||||||    
T  34757416 ataaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaataacactcctcaataataagt 34757348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21559866 - 21559909
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||    
T  21559866 attttttactttatctctctattgctttgattttcgtgcaaata 21559909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46812908 - 46812865
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||| |||| || ||||||    
T  46812908 attttttactttatctctctattgttttgatttttgtgcaaata 46812865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 10700129 - 10700083
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||| ||||||||||| ||||||| |||||| |||||||||||    
T  10700129 aaattatggttgtcccaaaagttgtcaatcaaatgattgttcaaata 10700083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 41430152 - 41430118
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  41430152 tttttactttatctctctattgctttggttttcgt 41430118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 41458664 - 41458781
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||| ||| |||||||||| |||| || |||||| | ||         |||||||||| |||||    || |||||||||||||||||||    
T  41458664 attttttactttatttctatattgttttgatttttgtgcaaatacctactttttctttataaattatggttgtcatgtaagttgtcaaccaaatggttgt 41458763  T
Q  101 tcaaatagtactcctcta 118  Q
    |||||||  |||||||||    
T  41458764 tcaaataacactcctcta 41458781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 49069372 - 49069418
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||||||    
T  49069372 aaattatagttgtcccaaaagttgtcaatcaaatggttgttcaaata 49069418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16708228 - 16708273
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||| |||||||||||||||||||| |||| || ||||||||    
T  16708228 attttttattttatctctctattgttttgatttttgtgcaaatatc 16708273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17682464 - 17682509
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||| |||||||||||||||||||| |||| || ||||||||    
T  17682464 attttttattttatctctctattgttttgatttttgtgcaaatatc 17682509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 42926209 - 42926250
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  42926209 tttttactttatctctctattgttttgatttctgtacaaata 42926250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4713641 - 4713673
Alignment:
Q  1 attttttactttatctctctattgttttggttt 33  Q
    ||||||||||||||||||||||||| |||||||    
T  4713641 attttttactttatctctctattgtgttggttt 4713673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11564961 - 11564997
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  11564961 attttttactttatctctctattgctttgattttcgt 11564997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21023120 - 21023088
Alignment:
Q  1 attttttactttatctctctattgttttggttt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  21023120 attttttactttatctctctattgttatggttt 21023088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 36533856 - 36533900
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaa 105  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||    
T  36533856 aaattatggttgtcccaaaagttgtcatcaaaatggttgttcaaa 36533900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 51)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 2563774 - 2563878
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||||         ||||||||||||||||| |||| |||||||||||||| ||||||    
T  2563774 tttttactttatctttctattgttttggttttcgtgcaaataccaactttttctttataaattatgattgtcctaaaagttgtcaaccaaatgattgttc 2563873  T
Q  103 aaata 107  Q
    |||||    
T  2563874 aaata 2563878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 32869894 - 32870010
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||| ||||| |||||||||||| |||||| |||           ||||||||| |||||||||||||||||||||||||||||||    
T  32869894 attttttactttatctctttattgctttggttttcgtgcaaataccaattttttctttgtaaattatggttgtcccaaaaattgtcaaccaaatggttgt 32869993  T
Q  101 tcaaatagtactcctct 117  Q
    |||||||  ||||||||    
T  32869994 tcaaataacactcctct 32870010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 6170700 - 6170814
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||          |||||||||| |||||| |||| |||||||||||||||||||||    
T  6170700 tttttactttatctctctattgctttggttttcgtgcaaataccaattttttttttataaattatggttgtcctaaaagttgtcaaccaaatggttgttc 6170799  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  6170800 aaataacactcctct 6170814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 35589388 - 35589275
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||          ||||||||| |||||||||||||| ||||| |||| ||||||     
T  35589388 tttttactttatctctctattgttttggttttcgtgcaaatatcaactttttctttgtaaattatggttgtcccaaaaattatcaactaaatagttgttt 35589289  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  35589288 aaataacactcctc 35589275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 6999069 - 6998955
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||          |||||||||| |||||| |||| ||||||||||||||||||||     
T  6999069 tttttactttatctctctattgctttggttttcgtgcaaataccaattttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttt 6998970  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  6998969 aaataacactcctct 6998955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 13765470 - 13765584
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||| || |||| |||||||||||| |||||| ||||          ||||||||| ||||||||||| |||||||||||||||||||||    
T  13765470 tttttactttatctttcgattgctttggttttcgtgcaaataccaactttttatttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttc 13765569  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  13765570 aaataacactcctct 13765584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 13347816 - 13347711
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgtt 101  Q
    |||||||||||||||||||||| |||||||||||| ||| || ||||           ||||||||| ||||||||||||||||||||||||||||||||    
T  13347816 tttttactttatctctctattgctttggttttcgtgcaattaccaacttatttttttgtaaattatggttgtcccaaaaattgtcaaccaaatggttgtt 13347717  T
Q  102 caaata 107  Q
    ||||||    
T  13347716 caaata 13347711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 24563016 - 24562904
Alignment:
Q  5 tttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaa 104  Q
    |||| ||||||||||||||| ||||||||||||  ||||| ||||         |||||||||| |||||| |||| |||||||||||||||||||||||    
T  24563016 tttattttatctctctattgctttggttttcgtgtaaataccaaccttttctttataaattatggttgtcctaaaagttgtcaaccaaatggttgttcaa 24562917  T
Q  105 atagtactcctct 117  Q
    |||  ||||||||    
T  24562916 ataacactcctct 24562904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 9377526 - 9377630
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||||| ||          |||||||||| |||| || || |||||||| ||||||||||||    
T  9377526 tttttactttatctctctattgctttggttttcgtgcaaatatctactttttctttgtaaattatgactgtctcataagttgtcaactaaatggttgttc 9377625  T
Q  103 aaata 107  Q
    |||||    
T  9377626 aaata 9377630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 9634437 - 9634333
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||          ||||||||| |||| | |||| |||||||||||||| ||||||    
T  9634437 tttttactttatctctatattgttttggttttcgtgcaaataccaactttttctttgtaaattatggttgttcaaaaagttgtcaaccaaatgattgttc 9634338  T
Q  103 aaata 107  Q
    |||||    
T  9634337 aaata 9634333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 39449337 - 39449441
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| |||||| ||||         |||||| ||| |||| |||||||||||||| ||||||||||||     
T  39449337 tttttactttatctctctattgctttgattttcgtgcaaataccaactttttctttataaatgatggttgttccaaaaattgtcaatcaaatggttgttt 39449436  T
Q  103 aaata 107  Q
    |||||    
T  39449437 aaata 39449441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 36644028 - 36643972
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 116  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||    
T  36644028 taaattatggttgtcccataaattgtcaaccaaatggttgttcaaataacactcctc 36643972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 36212061 - 36211944
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||  |||| ||||||| |||||||  ||         |||||||||||||||| || || || ||||||||||||||||||    
T  36212061 tttttactttatctctctattactttgattttcgtgcaaatatttactttttctttataaattatgattgtcacataatttatcaaccaaatggttgttc 36211962  T
Q  103 aaatagtactcctctatt 120  Q
    |||||  |||| ||||||    
T  36211961 aaataacactcatctatt 36211944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 23352851 - 23352794
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 117  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||  ||||||||    
T  23352851 taaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctct 23352794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 3012795 - 3012739
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 117  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||  ||||||||    
T  3012795 aaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctct 3012739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39213773 - 39213658
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||  ||| |||||||| |||||| ||||          ||||| ||| ||||||||||| ||||||| |||||||||||    
T  39213773 attttttactttatctctctattcctttagttttcgtgcaaataccaactttttctttgtaaatgatggttgtcccaaaagttgtcaatcaaatggttgt 39213674  T
Q  101 tcaaatagtactcctc 116  Q
    | |||||  |||||||    
T  39213673 ttaaataacactcctc 39213658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 4023294 - 4023247
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||||||||| || ||||||||||||||||||||||| |||||    
T  4023294 taaattatgattgtctcataaattgtcaaccaaatggttgttgaaata 4023247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 7574562 - 7574609
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  7574562 taaattatagttgttccaaaaattgtcaaccaaatggttgttcaaata 7574609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28245796 - 28245839
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  28245796 attttttactttatctctctattgctttggttttcgtgcaaata 28245839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 37105706 - 37105812
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||| ||||||| ||| |||||||| || ||| ||||          ||||||||| ||||| ||||| ||||||||||||| |||||    
T  37105706 attttttactttatctttctattgctttcgttttcgtgcacataccaactttttctttgtaaattatggttgtcacaaaagttgtcaaccaaatagttgt 37105805  T
Q  101 tcaaata 107  Q
    |||||||    
T  37105806 tcaaata 37105812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 40937067 - 40936949
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||| ||||||| |||||| | ||          ||||||||| ||||| || ||||||||| | |||||||| |    
T  40937067 attttttactttatctctctattgctttgattttcgtgcaaatacccactttttctttgtaaattatggttgtcacataaattgtcagctaaatggttat 40936968  T
Q  101 tcaaatagtactcctctat 119  Q
    |||||||  ||||||||||    
T  40936967 tcaaataacactcctctat 40936949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 4061963 - 4061922
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  4061963 tttttactttatctctctattgttttggtttccgtgcaaata 4061922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 7648460 - 7648501
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  7648460 tttttactttatctctctattgttttggtttttgtgcaaata 7648501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26277163 - 26277208
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||    
T  26277163 attttttactttatctctctattgctttagtttccgtacaaatatc 26277208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 30546371 - 30546330
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  30546371 tttttactttatctctctattgttttggttttcatgcaaata 30546330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 4299325 - 4299281
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||    
T  4299325 ttttttactttatctctctattgctttgattttcgtgcaaatatc 4299281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 20911870 - 20911914
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||||    
T  20911870 ttttttactttatctctctattgctttggtttccgtgcaaatatc 20911914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34119655 - 34119619
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  34119655 attttttactttatctctctattgttttgattttcgt 34119619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39449120 - 39449084
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  39449120 attttttactttatctctctattgttttgattttcgt 39449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 11385016 - 11384981
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgta 38  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11385016 tttttactttatctctctattgttttggtttccgta 11384981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12498639 - 12498596
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||    
T  12498639 attttttattttatctctctattgtcttggttttcgtgcaaata 12498596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25881612 - 25881655
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||    
T  25881612 attttttactttatctctctgttgctttggttttcgtataaata 25881655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 36517323 - 36517370
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||||||||||||||| || |||| ||||| ||||||||||||    
T  36517323 taaattatgattgtcccaaaagttatcaatcaaatagttgttcaaata 36517370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42678817 - 42678860
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||    
T  42678817 attttttactttatctctctattgctttggtttccgtgcaaata 42678860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44711992 - 44711949
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||    
T  44711992 attttttactttatctctctattgctttgattttcgtgcaaata 44711949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 7258504 - 7258458
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||  |||||||||||||||| || ||||||||||||||||||    
T  7258504 aaattatagttgtcccaaaaattgttaatcaaatggttgttcaaata 7258458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 10711794 - 10711907
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| ||||||||||||  ||||| | |           ||||||||||||||  ||||| || |||||||||| |||||||    
T  10711794 tttttactttatctctctattgctttggttttcgtgtaaatacctattttttctttgtaaattatgattgtttcaaaagttatcaaccaaatagttgttc 10711893  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  10711894 aaataacactcctc 10711907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 14233720 - 14233678
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatat 45  Q
    |||||||||||||||||||||| ||||||||| || |||||||    
T  14233720 tttttactttatctctctattgctttggtttttgtgcaaatat 14233678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 18876923 - 18876881
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||    
T  18876923 ttttttactttatctctctattgctttggtttccgtgcaaata 18876881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 34119596 - 34119550
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaat 106  Q
    |||||||||| |||| || || |||||||||||||||||||||||||    
T  34119596 taaattatgagtgtctcataagttgtcaaccaaatggttgttcaaat 34119550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38560746 - 38560788
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaat 43  Q
    |||||||||||||||||||||||| |||| ||||||| |||||    
T  38560746 attttttactttatctctctattgctttgattttcgtgcaaat 38560788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2841902 - 2841947
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||||||||||||| ||| |||| ||||||| ||||||||    
T  2841902 attttttactttatctctctgttgctttgattttcgtgcaaatatc 2841947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 15269931 - 15269972
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||| |||| ||||||| ||||||    
T  15269931 tttttactttatctctctattgctttgattttcgtgcaaata 15269972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 29361090 - 29361131
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||| |||| |||| |||||||||    
T  29361090 tttttactttatctctctattgctttgatttttgtacaaata 29361131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42866818 - 42866863
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||||||||||||||||| |||| | ||||| ||||||||    
T  42866818 attttttactttatctctctattgctttgatcttcgtgcaaatatc 42866863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4952483 - 4952447
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  4952483 attttttactttatctctctattgctatggttttcgt 4952447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 11769131 - 11769095
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgta 38  Q
    |||||||| |||||||||||||| |||||||||||||    
T  11769131 ttttttacgttatctctctattgctttggttttcgta 11769095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 16199713 - 16199681
Alignment:
Q  3 tttttactttatctctctattgttttggttttc 35  Q
    ||||||||||| |||||||||||||||||||||    
T  16199713 tttttactttacctctctattgttttggttttc 16199681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28244243 - 28244207
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  28244243 attttttactttatctctctattgctttgattttcgt 28244207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 41586612 - 41586548
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctattataa 124  Q
    ||||||||| |||| ||| || |||||||| |||||||||||||||||  ||| |||||| ||||    
T  41586612 taaattatggttgttccataagttgtcaactaaatggttgttcaaataacacttctctataataa 41586548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43513480 - 43513516
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  43513480 attttttactttatctctctattgctttgattttcgt 43513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 42569730 - 42569615
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||| ||||| |||| |||||||  ||||||||||         |||||||||| |||||| ||||||| ||||||||||||||||||    
T  42569730 tttttactttatctctttattgctttgattttcgtgtaaatatcaactttttctttataaattatggttgtcctaaaaattatcaaccaaatggttgttc 42569631  T
Q  103 aaatagtactcctcta 118  Q
    ||||| ||||||||||    
T  42569630 aaataatactcctcta 42569615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 16872157 - 16872053
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||||          ||||||||| ||||||||||| |||| ||||||||||||||||    
T  16872157 tttttactttatctctctattgctttgattttcgtgcaaatatcaactttttctttgtaaattatggttgtcccaaaagttgttaaccaaatggttgttc 16872058  T
Q  103 aaata 107  Q
    |||||    
T  16872057 aaata 16872053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 31597018 - 31597131
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||          ||||||||||||||| ||||| || |||| |||||||||||||    
T  31597018 tttttactttatctctctattgttttggtttttgtgcaaataccaactttttctttgtaaattatgattgtctcaaaagttatcaatcaaatggttgttc 31597117  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  31597118 aaataacactcctc 31597131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 2733057 - 2733171
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaacc-aaatggttgtt 101  Q
    ||||||||||||||||||||| ||||||||| ||| |||||| | ||         |||||||||||||||| |||||||||| |||| || ||||||||    
T  2733057 tttttactttatctctctattattttggtttccgtgcaaatacctactttttctttataaattatgattgtcacaaaaattgttaaccgaattggttgtt 2733156  T
Q  102 caaatagtactcctc 116  Q
    ||||||  |||||||    
T  2733157 caaataacactcctc 2733171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 12707219 - 12707339
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnna-taaattatgattgtcccaaaaattgtcaaccaaatggttgtt 101  Q
    |||||| ||||||||||||||||||||||||||||  ||||| ||||           ||||||||| |||||||| || |  |||||||||||||||||    
T  12707219 tttttaatttatctctctattgttttggttttcgtgtaaataccaacttttttctttgtaaattatggttgtcccataagtgctcaaccaaatggttgtt 12707318  T
Q  102 caaatagtactcctctattat 122  Q
    ||||||  |||||||||||||    
T  12707319 caaataacactcctctattat 12707339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 12783835 - 12783876
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  12783835 tttttactttatctctctattgttttggtttccgtacaaata 12783876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 28646741 - 28646857
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaa-tggttgt 100  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| ||         |||||||||| || || || || ||||||| |||| |||||||    
T  28646741 ttttttactttatctctctgttgctttggttttcgtacaaatatctactttttctttataaattatggttatcacataagttgtcaatcaaattggttgt 28646840  T
Q  101 tcaaatagtactcctct 117  Q
    |||||||  ||||||||    
T  28646841 tcaaataacactcctct 28646857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 28651325 - 28651441
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaa-tggttgt 100  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| ||         |||||||||| || || || || ||||||| |||| |||||||    
T  28651325 ttttttactttatctctctgttgctttggttttcgtacaaatatctactttttctttataaattatggttatcacataagttgtcaatcaaattggttgt 28651424  T
Q  101 tcaaatagtactcctct 117  Q
    |||||||  ||||||||    
T  28651425 tcaaataacactcctct 28651441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41159892 - 41159849
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  41159892 attttttactttatctctctattgctttggttttcgtgcaaata 41159849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 34018878 - 34018991
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||| |||||||||||||| |||||| ||| || ||||          ||||||||| ||||||| ||| |||| ||||||||||||| ||    
T  34018878 tttttactttatcactctattgttttgggtttcgtgcaattaccaactttttctttgtaaattatggttgtcccgaaagttgttaaccaaatggttgatc 34018977  T
Q  103 aaatagtactcctc 116  Q
    |||||  |||||||    
T  34018978 aaataacactcctc 34018991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 41541983 - 41542029
Alignment:
Q  59 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaa 105  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||    
T  41541983 ataaattatggttgtcccataagttgtcaaccaaatggttgttcaaa 41542029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4994449 - 4994494
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||    
T  4994449 attttttactttatctctctattgatttggtttccgtgcaaatatc 4994494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 36424603 - 36424562
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  36424603 tttttactttatctctctattgttttggtttccgtgcaaata 36424562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 36885432 - 36885375
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 117  Q
    ||||||||| |||||||| || ||||| ||||||||||||||||||||  ||||||||    
T  36885432 taaattatggttgtcccataagttgtccaccaaatggttgttcaaataacactcctct 36885375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 36568026 - 36568135
Alignment:
Q  1 attttttactttatctctctattgttttggttttc---gtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggt 97  Q
    |||||||||||||||||||||||| |||||||||    ||||||||| | ||          ||||||||| |||||||| || ||||||| ||||||||    
T  36568026 attttttactttatctctctattgctttggttttttttgtacaaatacctactttttttgtgtaaattatggttgtcccataagttgtcaatcaaatggt 36568125  T
Q  98 tgttcaaata 107  Q
    ||||||||||    
T  36568126 tgttcaaata 36568135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30439509 - 30439466
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||    
T  30439509 attttttactttatctctctattgctttgattttcgtgcaaata 30439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34718183 - 34718226
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| |||| |||||||||    
T  34718183 attttttactttatctctctattgctttgatttttgtacaaata 34718226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42110186 - 42110143
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||| |||||||||||||||||| | ||||||||    
T  42110186 attttttactttatttctctattgttttggtttccatacaaata 42110143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 43397700 - 43397747
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||||||||||||| | ||| ||||||||||||| ||||||||||||    
T  43397700 taaattatgattgtctctaaagttgtcaaccaaatagttgttcaaata 43397747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 4658264 - 4658218
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaac 49  Q
    |||||||||||||||||||||| ||||||||| || |||||| ||||    
T  4658264 tttttactttatctctctattgctttggtttttgtgcaaataccaac 4658218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 8645234 - 8645264
Alignment:
Q  3 tttttactttatctctctattgttttggttt 33  Q
    |||||||||||||||||||||||||||||||    
T  8645234 tttttactttatctctctattgttttggttt 8645264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 36110208 - 36110242
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  36110208 tttttactttatctctctattgttatggttttcgt 36110242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 41701292 - 41701338
Alignment:
Q  59 ataaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaa 105  Q
    ||||||||||||||||| | ||||| ||||||||| |||||||||||    
T  41701292 ataaattatgattgtccaataaattatcaaccaaacggttgttcaaa 41701338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 7173279 - 7173312
Alignment:
Q  4 ttttactttatctctctattgttttggttttcgt 37  Q
    ||||||||||||| ||||||||||||||||||||    
T  7173279 ttttactttatctttctattgttttggttttcgt 7173312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 7473027 - 7472986
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||| ||| |||||||| ||||||    
T  7473027 tttttactttatctctctattgctttagttttcgtgcaaata 7472986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 16327153 - 16327112
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||| ||||||||||| | ||||||    
T  16327153 tttttactttatctctctattattttggttttcttgcaaata 16327112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 29440524 - 29440483
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||    
T  29440524 tttttactttatctctctattgttttgatttccgtgcaaata 29440483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 41701232 - 41701273
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||| ||||||||||| |||||||| ||||||    
T  41701232 tttttactttatctatctattgttttagttttcgtgcaaata 41701273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 8497671 - 8497627
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    ||||||||||||||||||||||| |||   |||||||||||||||    
T  8497671 ttttttactttatctctctattgctttaaatttcgtacaaatatc 8497627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 10592242 - 10592206
Alignment:
Q  71 tgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  10592242 tgtcccaaaagttgtcaatcaaatggttgttcaaata 10592206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29991480 - 29991516
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  29991480 attttttactttatctctctattgctttgattttcgt 29991516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 30439450 - 30439394
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 116  Q
    ||||||||| ||||| || || || |||||||||||||||||||||||  |||||||    
T  30439450 taaattatggttgtcacataagttatcaaccaaatggttgttcaaataacactcctc 30439394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 38708297 - 38708253
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||||||||||| ||||||||| ||| ||| ||||||||    
T  38708297 ttttttactttatctctccattgttttgatttccgtgcaaatatc 38708253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40739915 - 40739883
Alignment:
Q  1 attttttactttatctctctattgttttggttt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  40739915 attttttactttatctctctattgttatggttt 40739883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 22819719 - 22819838
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||| ||||| |||| ||||||| |||||| ||||          ||||||||| ||||||||||| |||||||||||||||||||||    
T  22819719 tttttactttatctctttattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatggttgttc 22819818  T
Q  103 aaatagtactcctctattat 122  Q
    |||||  |||||||||||||    
T  22819819 aaataacactcctctattat 22819838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 31657716 - 31657830
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| ||||||||||||  ||||| ||||          ||||| ||| ||||||||||||||||||||||||||||||||     
T  31657716 tttttactttatctctctattgctttggttttcgtgtaaataccaactttttctatgtaaatgatggttgtcccaaaaattgtcaaccaaatggttgttt 31657815  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  31657816 aaataacactcctct 31657830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 39344981 - 39344867
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||           ||||||||||||||| ||||| || ||||||||||||||||||    
T  39344981 tttttactttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaaattatgattgtctcaaaagttatcaaccaaatggttgttc 39344882  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  39344881 aaataacactcctct 39344867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 14010119 - 14010004
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||          |||||||||| ||||||||||| |||||||||||||  || |||    
T  14010119 tttttactttatctctctattattttggttttcgtgcaaataccaattttttctttataaattatggttgtcccaaaagttgtcaaccaaataattattc 14010020  T
Q  103 aaatagtactcctcta 118  Q
    |||||  |||||||||    
T  14010019 aaataacactcctcta 14010004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2999180 - 2999297
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||||||||| |||||||||| | |||||| ||||          ||||||||| |||||| |||| |||||||  ||||||||||    
T  2999180 attttttactttatctctctattgctttggttttcatgcaaataccaactttttctttgtaaattatggttgtcctaaaagttgtcaattaaatggttgt 2999279  T
Q  101 tcaaatagtactcctcta 118  Q
    |||||||  |||||||||    
T  2999280 tcaaataacactcctcta 2999297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 17683468 - 17683525
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctct 117  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  17683468 taaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 17683525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 18882976 - 18882872
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| |||||||||||||| | |           |||||||||||| | |||||| |||||||||||||||||||||    
T  18882976 tttttactttatctctctattgctttgattttcgtacaaatacctattttttctttgtaaattatgatttttccaaaagttgtcaaccaaatggttgttc 18882877  T
Q  103 aaata 107  Q
    |||||    
T  18882876 aaata 18882872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 26718438 - 26718542
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||  |||| |||| || |||||| ||||          |||||||||||||||||||||||| |||||||||||||| |||    
T  26718438 tttttactttatctctctattactttgttttttgtgcaaataccaactttttctttgtaaattatgattgtcccaaaaattatcaaccaaatggttattc 26718537  T
Q  103 aaata 107  Q
    |||||    
T  26718538 aaata 26718542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 26731066 - 26731170
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||  |||| |||| || |||||| ||||          |||||||||||||||||||||||| |||||||||||||| |||    
T  26731066 tttttactttatctctctattactttgttttttgtgcaaataccaactttttctttgtaaattatgattgtcccaaaaattatcaaccaaatggttattc 26731165  T
Q  103 aaata 107  Q
    |||||    
T  26731166 aaata 26731170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 46405975 - 46405871
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| ||||||| |||||| ||||          ||||||||| |||||| ||||||| ||||||||||| ||||||    
T  46405975 tttttactttatctctctattgctttgattttcgtgcaaataccaactttttctttgtaaattatggttgtccaaaaaattatcaaccaaatgattgttc 46405876  T
Q  103 aaata 107  Q
    |||||    
T  46405875 aaata 46405871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 45143674 - 45143570
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    ||||||||||||||||||  ||| ||||||||||||| |||||| ||||          ||||||||| ||||||||||| ||||||||||||| |||||    
T  45143674 attttttactttatctct--attattttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatagttgt 45143577  T
Q  101 tcaaata 107  Q
    |||||||    
T  45143576 tcaaata 45143570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 45152443 - 45152339
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    ||||||||||||||||||  ||| ||||||||||||| |||||| ||||          ||||||||| ||||||||||| ||||||||||||| |||||    
T  45152443 attttttactttatctct--attattttggttttcgtgcaaataccaactttttctttgtaaattatggttgtcccaaaagttgtcaaccaaatagttgt 45152346  T
Q  101 tcaaata 107  Q
    |||||||    
T  45152345 tcaaata 45152339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 21172348 - 21172454
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    |||||||||||||||||| |||||||||||||||||||  |||||| ||          |||||||||||| ||||| ||||| ||||| |||| |||||    
T  21172348 attttttactttatctctttattgttttggttttcgtatcaatatctactttttctttgtaaattatgattatcccataaattatcaactaaatagttgt 21172447  T
Q  101 tcaaata 107  Q
    |||||||    
T  21172448 tcaaata 21172454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 13139219 - 13139321
Alignment:
Q  4 ttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttca 103  Q
    ||||| |||||||||||||| ||||||||||||| |||||| ||||          ||||||||  |||| ||||||||| |||||||||||||||||||    
T  13139219 ttttaatttatctctctatttttttggttttcgtgcaaataccaactttttctttgtaaattatagttgt-ccaaaaattatcaaccaaatggttgttca 13139317  T
Q  104 aata 107  Q
    ||||    
T  13139318 aata 13139321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 47099147 - 47099203
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctc 116  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||||  |||||||    
T  47099147 taaattatggttgtcccaaaagttatcaaccaaatggttgttcaaataacactcctc 47099203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21617251 - 21617294
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||    
T  21617251 attttttactttatctctctattgttttgattttcgtgcaaata 21617294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 38338923 - 38338809
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||| |||| || |||||| | |          |||||||||| |||| ||||||||| ||||||||||| ||||||    
T  38338923 tttttactttatctctctattgctttgatttttgtgcaaatacctattttttctttataaattatggttgttccaaaaattatcaaccaaatgattgttc 38338824  T
Q  103 aaatagtactcctct 117  Q
     |||| |||||||||    
T  38338823 gaataatactcctct 38338809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 51573635 - 51573592
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  51573635 attttttactttatctctctattgctttgattttcgtacaaata 51573592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 51852144 - 51852187
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||||||||||||| || ||||||    
T  51852144 attttttactttatctctctattgttttggtttttgtgcaaata 51852187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 51887731 - 51887774
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||    
T  51887731 attttttactttatctctctattgttttgattttcgtgcaaata 51887774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 52846173 - 52846126
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  52846173 taaattatgattgtcctaaaaattgtcaatcaaatagttgttcaaata 52846126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 42491202 - 42491248
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  42491202 aaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaata 42491248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 50831698 - 50831652
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  50831698 aaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaata 50831652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 33860716 - 33860757
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  33860716 tttttactttatctctctattgttttggtttccgtgcaaata 33860757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 12799841 - 12799901
Alignment:
Q  60 taaattatgattgtcccaaaaattgtcaaccaaatggttgttcaaatagtactcctctatt 120  Q
    ||||||||||||||| || || |||| |||||||||||||||||||||  | |||||||||    
T  12799841 taaattatgattgtcacataagttgttaaccaaatggttgttcaaataacattcctctatt 12799901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 7628101 - 7628139
Alignment:
Q  5 tttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  7628101 tttactttatctctctattgttttgg-tttcgtacaaata 7628139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 12595570 - 12595527
Alignment:
Q  64 ttatgattgtcccaaaaattgtcaaccaaatggttgttcaaata 107  Q
    ||||| |||||||||||||||||| | |||||||||||||||||    
T  12595570 ttatggttgtcccaaaaattgtcatcaaaatggttgttcaaata 12595527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28657444 - 28657401
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||    
T  28657444 attttttactttatctctctattgctttggtttccgtgcaaata 28657401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 49768321 - 49768278
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||    
T  49768321 attttttactttatctctctattgctttgattttcgtgcaaata 49768278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 5249939 - 5249973
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||| ||||||||||||||||||||||||    
T  5249939 tttttactttctctctctattgttttggttttcgt 5249973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 14451463 - 14451497
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  14451463 tttttactttatctctctattgttatggttttcgt 14451497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 27326753 - 27326707
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaac 49  Q
    |||||||||||| ||||||||| |||||||||||| |||||| ||||    
T  27326753 tttttactttatttctctattgctttggttttcgtgcaaataccaac 27326707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 31559609 - 31559643
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||| ||||||||||||||||||||||||    
T  31559609 tttttactttctctctctattgttttggttttcgt 31559643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 40609742 - 40609800
Alignment:
Q  61 aaattatgattgtcccaaaaattgtcaaccaaa-tggttgttcaaatagtactcctcta 118  Q
    |||||||| ||||| ||||| |||||||||||| ||||||||||||||  |||||||||    
T  40609742 aaattatggttgtcacaaaagttgtcaaccaaattggttgttcaaataacactcctcta 40609800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 42667275 - 42667305
Alignment:
Q  3 tttttactttatctctctattgttttggttt 33  Q
    |||||||||||||||||||||||||||||||    
T  42667275 tttttactttatctctctattgttttggttt 42667305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 51194339 - 51194373
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  51194339 tttttactttatctctctattgttatggttttcgt 51194373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51746288 - 51746334
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatca 47  Q
    |||||||||||||||||||||||||| |||||| ||| | |||||||    
T  51746288 attttttactttatctctctattgttatggtttccgtgccaatatca 51746334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 2313322 - 2313281
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||| ||||||||| |||| ||||||||||||||||||||||    
T  2313322 ttttcactttatctttctagtgttttggttttcgtacaaata 2313281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 4949575 - 4949616
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||  |||||||||||||| ||||||||||    
T  4949575 tttttactttatctcattattgttttggtttccgtacaaata 4949616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 9362680 - 9362639
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||    
T  9362680 tttttactttatctctctattgttttgatttccgtgcaaata 9362639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 12595630 - 12595597
Alignment:
Q  4 ttttactttatctctctattgttttggttttcgt 37  Q
    ||||||||| ||||||||||||||||||||||||    
T  12595630 ttttactttctctctctattgttttggttttcgt 12595597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 17683294 - 17683323
Alignment:
Q  3 tttttactttatctctctattgttttggtt 32  Q
    ||||||||||||||||||||||||||||||    
T  17683294 tttttactttatctctctattgttttggtt 17683323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 56271430 - 56271471
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  56271430 tttttattttatctctctattgctttggttttcgtgcaaata 56271471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13263400 - 13263364
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  13263400 attttttactttatctctctattgctttgattttcgt 13263364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14113616 - 14113580
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  14113616 attttttactttatctctctattgctttgattttcgt 14113580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14593896 - 14593936
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaa 41  Q
    ||||||||||||| |||||||||| |||| |||||||||||    
T  14593896 attttttactttacctctctattgctttgattttcgtacaa 14593936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 23853805 - 23853845
Alignment:
Q  4 ttttactttatctctctattgttttggttttcgtacaaata 44  Q
    |||||||||||||||||||| |||||||||| || ||||||    
T  23853805 ttttactttatctctctattattttggtttttgttcaaata 23853845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28458380 - 28458344
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  28458380 attttttactttatctctctattgctttgattttcgt 28458344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 31092579 - 31092619
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaat 43  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  31092579 tttttactttatctctctattgttgtgattttcgtgcaaat 31092619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 32696713 - 32696685
Alignment:
Q  79 aaattgtcaaccaaatggttgttcaaata 107  Q
    |||||||||||||||||||||||||||||    
T  32696713 aaattgtcaaccaaatggttgttcaaata 32696685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49896669 - 49896633
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  49896669 attttttactttatctctctattgctttgattttcgt 49896633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 53299255 - 53299298
Alignment:
Q  3 tttttactttatctctct--attgttttggttttcgtacaaata 44  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||    
T  53299255 tttttaccttatctctctttattgttttggttttcgtacaaata 53299298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 12002 - 12116
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||||          ||||||||| ||||| ||||| ||||||||||||| |||||||    
T  12002 tttttactttatctctctattgttttggttttcgtgcacataccaactttttctttgtaaattatggttgtcgcaaaagttgtcaaccaaatagttgttc 12101  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  12102 aaataacactcctct 12116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 11032 - 11148
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgt 100  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| | ||          ||||||||||||||| || || |||||||||||| ||||||    
T  11032 attttttactttatctctctattgttttgattttcgtgcaaatacccactttttctttgtaaattatgattgtcacataagttgtcaaccaaaaggttgt 11131  T
Q  101 tcaaatagtactcctct 117  Q
    |||||||  ||||||||    
T  11132 tcaaataacactcctct 11148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 38495 - 38609
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaacnnnnnnnnnataaattatgattgtcccaaaaattgtcaaccaaatggttgttc 102  Q
    |||||||||||||||||||||| |||||||||||| | |||| ||||          ||||||||  ||||||||||| |||||||| ||||||||||||    
T  38495 tttttactttatctctctattgctttggttttcgtgcgaataccaactttttctttgtaaattatagttgtcccaaaagttgtcaactaaatggttgttc 38594  T
Q  103 aaatagtactcctct 117  Q
    |||||  ||||||||    
T  38595 aaataacactcctct 38609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 839 - 883
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  839 ttttttactttatctctctattattttggttttcgtgcaaatatc 883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 8284 - 8330
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgtacaaatatcaac 49  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||    
T  8284 tttttactttatccctctattgctttggttttcgtgcaaatatcaac 8330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 134306 - 134270
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  134306 attttttactttatctctttattgttttggttttcgt 134270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 77 - 111
Alignment:
Q  3 tttttactttatctctctattgttttggttttcgt 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  77 tttttactttatctctctattgttatggttttcgt 111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41823 - 41868
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    |||||||||||||| ||||||||| |||| ||||||| ||||||||    
T  41823 attttttactttatttctctattgctttgattttcgtgcaaatatc 41868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 62695 - 62652
Alignment:
Q  2 ttttttactttatctctctattgttttggttttcgtacaaatatc 46  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||    
T  62695 ttttttactttatctttctattattttgg-tttcgtacaaatatc 62652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 223482 - 223442
Alignment:
Q  1 attttttactttatctctctattgttttggttttcgtacaa 41  Q
    ||||||||||||| |||||||||| |||| |||||||||||    
T  223482 attttttactttacctctctattgctttgattttcgtacaa 223442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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