View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_high_16 (Length: 510)

Name: NF1314_high_16
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_high_16
NF1314_high_16
[»] chr4 (17 HSPs)
chr4 (89-498)||(3800482-3800891)
chr4 (30-395)||(4001129-4001495)
chr4 (30-395)||(4217454-4217829)
chr4 (32-494)||(4008838-4009295)
chr4 (30-493)||(3956314-3956763)
chr4 (30-397)||(3985823-3986199)
chr4 (30-349)||(3933925-3934250)
chr4 (30-349)||(3920704-3921029)
chr4 (30-198)||(4024023-4024191)
chr4 (33-479)||(3808859-3809297)
chr4 (33-194)||(3816435-3816596)
chr4 (209-494)||(4024247-4024531)
chr4 (411-480)||(3816815-3816884)
chr4 (411-494)||(4001522-4001605)
chr4 (392-480)||(3933804-3933892)
chr4 (392-443)||(3920620-3920671)
chr4 (36-148)||(3964684-3964796)
[»] chr5 (1 HSPs)
chr5 (30-494)||(13396797-13397246)
[»] chr8 (2 HSPs)
chr8 (71-196)||(7031762-7031887)
chr8 (71-196)||(7037471-7037596)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 89 - 498
Target Start/End: Original strand, 3800482 - 3800891
Alignment:
Q  89 ataacaagattctctgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagccctt 188  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3800482 ataacaagattctttgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttggaaaagattgaagccctt 3800581  T
Q  189 gaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatga 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||    
T  3800582 gaggaagaagttccaaatcgtatttaccatgaaaatccaaatatcgcaagttggtcatcttagcaaatacatgagggcttaacttcagcttcctaaatga 3800681  T
Q  289 tgacaagtctacacgtatgcttctaatagcatcagtaccctaccattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataac 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800682 tgacaagtctacacgtatgcttctaatagcatcagtaccctaccattaacgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataac 3800781  T
Q  389 atatgttatctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttctagggtct 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800782 atatgttatctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttctagggtct 3800881  T
Q  489 tcactatatt 498  Q
    ||||||||||    
T  3800882 tcactatatt 3800891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 4001129 - 4001495
Alignment:
Q  30 attcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattt 129  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||     |||| ||||||||||||||||| | |||||||||||| ||||||||||||    
T  4001129 attcaattacctgcactccacaccaaagattttccactcgactatgtgaaaagtccaatataacaagattctttccagaaaacttctttgggaatgattt 4001228  T
Q  130 tagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaaa 229  Q
    |||||||||||| ||||||  || ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  4001229 tagagggtaatgtatccaacaaatatatcttagatcagttgggaaagattgaagcccttgaggaagaagttccaaatcgtatttaccaatgaaatccaaa 4001328  T
Q  230 tatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4001329 tatcgcaggttggtcatcttagcaaatacatgagggcttaacttcagcttcctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccct 4001428  T
Q  330 accattaatgtaaaagaaaaatttc-aatcattgaaagccatatttttaaccaaaataacatatgtt 395  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  4001429 accattaatgtaaaagaaaaattacaaatcattgaaagccatatttttaaccaaaatgacatatgtt 4001495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 4217454 - 4217829
Alignment:
Q  30 attcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattt 129  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4217454 attcaattacctgtactccacaccaaagcttttccactttactataacgcaagttcaatataacaagattctctgcagaaaagttctctgggaatgattt 4217553  T
Q  130 tagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaa---------atcgtatttaccatga 220  Q
    ||||||||||   | |||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||         ||||||   ||||  |    
T  4217554 tagagggtaacatacccaacgaagatatcttagatcatttggaaaagattgaagccctcgaggaagaagatccaaacagtcattatcgtacccaccaaaa 4217653  T
Q  221 aaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcat 320  Q
    |||| |||| ||  |||||||||||||||||||||||||||||||||||||| || |  || || ||||||||||| |||||||||||||||||||||||    
T  4217654 aaattcaaaaatttcaggttggtcatcttagcaaatacatgagggcttaacttcagcatccaaactgatgacaagtttacacgtatgcttctaatagcat 4217753  T
Q  321 cagtaccctaccattaatgtaaaagaaaaatttc-aatcattgaaagccatatttttaaccaaaataacatatgtt 395  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||||| |||||||||    
T  4217754 cagtaccctaccattaatgtaaaagaaaaattacaaatcattgaaagccaaatttgtaaccaaaatgacatatgtt 4217829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 32 - 494
Target Start/End: Original strand, 4008838 - 4009295
Alignment:
Q  32 tcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgatttta 131  Q
    ||||||||||  |||||| ||||||||||||| ||||| ||| |   |||||  ||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  4008838 tcaattaccttcactccataccaaagcttttctacttggctaaatgacaagtcaaatataacaagattctccgcagaaaacttctttggcaatgatttta 4008937  T
Q  132 gagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaa---------tcgtatttaccatgaaa 222  Q
    ||||||||  |||||||  || ||||||||||||| |||||||| |||||| |||| |||||| ||| ||||||         | || |  |||||||||    
T  4008938 gagggtaactcatccaagaaatatatcttagatcagttggaaaagattgaatccctcgaggaaaaagatccaaacattcttgatagtttccaccatgaaa 4009037  T
Q  223 atccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatca 322  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| || || ||| |  | |||||||||||||||||||||||||||| |||||    
T  4009038 atccaaaaatagcaggttggtcatcttagcaaatacatgagggcttaacttcagcttcctgatcgctgacaagtctacacgtatgcttctaataacatca 4009137  T
Q  323 gtaccctaccattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataacatatgttatctgaaatagccaaatattttttacc 422  Q
    || |||| |||||||||||||||||||   ||||            ||| |||| |||||||| ||| ||||||||| |||| ||||||||| |||||||    
T  4009138 gtgccctgccattaatgtaaaagaaaa---tcaa-----------aatactttttaccaaaatgacaaatgttatctaaaattgccaaatatattttacc 4009223  T
Q  423 ttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttctagggtcttcacta 494  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |||||||||    
T  4009224 ttgtcgtttttcaatacatcatagataatatcaggatcccatagttgactgcattttataggatcttcacta 4009295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 30 - 493
Target Start/End: Complemental strand, 3956763 - 3956314
Alignment:
Q  30 attcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattt 129  Q
    ||||||||| ||| |||||||||||||| ||||||| | | |||     || || ||||||||||||||||||||||||||||||||||| || ||||||    
T  3956763 attcaattatctgcactccacaccaaagtttttccagtaggctacctgacaggtccaatataacaagattctctgcagaaaacttctctgagagtgattt 3956664  T
Q  130 tagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaaa 229  Q
    ||||||||||   ||||||||||||||| |||||||| |||||||| |||||| ||||| ||||| | | |||||| | | | |  || |||||||||||    
T  3956663 tagagggtaacatatccaatgaagatattttagatcagttggaaaagattgaatcccttcaggaatacgatccaaaccatctatgtcacgaaaatccaaa 3956564  T
Q  230 tatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccct 329  Q
     |  ||||||||||||||||| |||||||||  |||||||||| ||  | ||||  || ||||||||||| || ||||||||||||||||||||||||||    
T  3956563 aactgcaggttggtcatcttatcaaatacattggggcttaacttcagtttcctacttgctgacaagtctagacttatgcttctaatagcatcagtaccct 3956464  T
Q  330 accattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataacatatgttatctgaaatagccaaatattttttaccttgtcat 429  Q
      ||||||||||||||||||           | |||   |||||||| |||| ||  ||| ||||||||| |||| ||||||||||||||||||||||||    
T  3956463 gtcattaatgtaaaagaaaa-----------tcaaa---atatttttcaccagaaagacaaatgttatctaaaattgccaaatattttttaccttgtcat 3956378  T
Q  430 ttttcaatacatcatagataatatcaggatcccataaatgactgcattttctagggtcttcact 493  Q
    ||||||||||||||||||||||||||||||   ||||  |||||||||||||||||||||||||    
T  3956377 ttttcaatacatcatagataatatcaggattggataatcgactgcattttctagggtcttcact 3956314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 30 - 397
Target Start/End: Original strand, 3985823 - 3986199
Alignment:
Q  30 attcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattt 129  Q
    ||||||||||||| |||||||||||||||||||| ||| | |||||   ||||| |||||||||||| ||||||||||||||||||| ||| ||||| |     
T  3985823 attcaattacctgtactccacaccaaagcttttctactaggctatacgacaagtccaatataacaagtttctctgcagaaaacttctttggcaatgactc 3985922  T
Q  130 tagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaa---------atcgtatttaccatga 220  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||         || |||   ||||| |    
T  3985923 tagagggtaatgtacccaatgaagatatcttagatcagttggaaaaggttgaagcccttgaggaagaagatccaaacaatcatgattgtacccaccataa 3986022  T
Q  221 aaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcat 320  Q
    ||||||||| ||  |||||| ||||||||||||||||||| ||||||||||| || || ||||| || |||||||| || || |||||||||||||||||    
T  3986023 aaatccaaaaatttcaggttcgtcatcttagcaaatacatcagggcttaacttcagcttcctaattgctgacaagtttagacatatgcttctaatagcat 3986122  T
Q  321 cagtaccctaccattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataacatatgttat 397  Q
    |||||||||  ||| |||| ||||||||| | | |||||||||||| || ||||| ||||||||||||| |||||||    
T  3986123 cagtaccctgtcatgaatggaaaagaaaattctaaatcattgaaagacacattttaaaccaaaataacaaatgttat 3986199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 30 - 349
Target Start/End: Complemental strand, 3934250 - 3933925
Alignment:
Q  30 attcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattt 129  Q
    ||||||||||||| ||||||||||| |||||||||| | |||||  |  ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3934250 attcaattacctgtactccacaccatagcttttccattcgactaagatacaagtccaatataacaagattctctgcagaaaacttctctgggaatgattt 3934151  T
Q  130 tagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgt------atttaccatgaaaa 223  Q
    ||||||||||   | ||||||||||||||| ||| || |||||||| ||| |||||||||||||| ||| ||||||| ||      | | | |   ||||    
T  3934150 tagagggtaacatacccaatgaagatatctaagaccagttggaaaagattcaagcccttgaggaaaaagatccaaatagtcatcaaaatcaacccaaaaa 3934051  T
Q  224 tccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcag 323  Q
    | |||| || | ||||||||||||||| |||||||||||||||||||||  | || ||||  |  | | |||||||||||||||||||| ||||||||||    
T  3934050 ttcaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagcttcctattttctaagaagtctacacgtatgcttctgatagcatcag 3933951  T
Q  324 taccctaccattaatgtaaaagaaaa 349  Q
     ||||| |||||||||||||||||||    
T  3933950 aaccctgccattaatgtaaaagaaaa 3933925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 30 - 349
Target Start/End: Complemental strand, 3921029 - 3920704
Alignment:
Q  30 attcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattt 129  Q
    ||||||||||||| ||||||||||| |||||||||| | ||| |  |  ||||| |||||||||||||||||| ||| |||||||||||| |||||||||    
T  3921029 attcaattacctgtactccacaccatagcttttccattcgaccaagatacaagtccaatataacaagattctcagcaaaaaacttctctgagaatgattt 3920930  T
Q  130 tagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgt------atttaccatgaaaa 223  Q
    |||||||||||  ||||||||||||||||||| | || |||||||| ||| |||||||||||||| ||| ||||||| ||      | | |||   ||||    
T  3920929 tagagggtaatctatccaatgaagatatcttaaaccagttggaaaagattcaagcccttgaggaaaaagatccaaatagtcatcaaaataaccccaaaaa 3920830  T
Q  224 tccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcag 323  Q
    |||||| || | ||||||||||||||| |||||||||||||||||||||  | || ||||  |  | | |||| ||||||||||||||| ||||||||||    
T  3920829 tccaaaaattggaggttggtcatcttatcaaatacatgagggcttaactttagcttcctattttctaagaagtttacacgtatgcttctgatagcatcag 3920730  T
Q  324 taccctaccattaatgtaaaagaaaa 349  Q
     ||||| |||||||||||||||||||    
T  3920729 aaccctgccattaatgtaaaagaaaa 3920704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 4024023 - 4024191
Alignment:
Q  30 attcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattt 129  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||    ||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  4024023 attcacttacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaacttctctgggaatgattt 4024122  T
Q  130 tagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaag 198  Q
    ||||||||||| |||||||  |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  4024123 tagagggtaattcatccaagaaagatatcttagatcagttggaaaagattgaagcccttgaggaagaag 4024191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 479
Target Start/End: Original strand, 3808859 - 3809297
Alignment:
Q  33 caattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttag 132  Q
    |||||||||| ||||||| |||||||||||||| || ||||| |  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3808859 caattacctgcactccacgccaaagcttttccattttactatcatacaagttcaatataacaagattctctgcagaaaagttctctgggaatgattttag 3808958  T
Q  133 agggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaaatat 232  Q
    |||  ||| ||||||||||||||||||||||| | |||||||| |||||| || ||||||||||   |  |||   | | || ||  ||||| |||| ||    
T  3808959 aggacaatacatccaatgaagatatcttagattagttggaaaagattgaaacctttgaggaagacaattgaaactatctatatcaccaaaatacaaaaat 3809058  T
Q  233 cgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccctacc 332  Q
    || || |||||||||||| |||||||| ||||||||||||| | || ||| | || |  |      | || ||||||||| |||| |||||||||||  |    
T  3809059 cgaagtttggtcatcttatcaaatacacgagggcttaactcgagcttcctcattgttcgc------agacttatgcttcttatagaatcagtaccctgtc 3809152  T
Q  333 attaatgtaaaagaaaa-atttcaatcattgaaagccatatttttaaccaaaataacatatgttatctgaaatagccaaatattttttaccttgtcattt 431  Q
    || || |||||| |||| |||  |||| ||||||| ||  ||||||| ||| || ||| ||||||||| |||  |  | ||| |||||||||||||||||    
T  3809153 atgaaagtaaaataaaacattaaaatctttgaaaggcacctttttaa-caacatgacaaatgttatctaaaaatg--acatactttttaccttgtcattt 3809249  T
Q  432 ttcaatacatcatagataatatcaggatcccataaatgactgcatttt 479  Q
    |||||||||||||| ||   |||||||| ||||||  |||||| ||||    
T  3809250 ttcaatacatcataaatttcatcaggattccataatcgactgcgtttt 3809297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 3816435 - 3816596
Alignment:
Q  33 caattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttag 132  Q
    |||||||||| |||||||||||||||||||||||| ||||||    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3816435 caattacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaacttctctgggaatgattttag 3816534  T
Q  133 agggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaa 194  Q
    |||| | |   |||||||||||||| ||| | ||  ||||||| ||||||||||||||||||    
T  3816535 agggcagtatgtccaatgaagatattttataccaagtggaaaagattgaagcccttgaggaa 3816596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 209 - 494
Target Start/End: Original strand, 4024247 - 4024531
Alignment:
Q  209 tatttaccatgaaaatccaaatatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgc 308  Q
    |||| |||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||||  || ||  ||   |  |||||||||||||| |||||    
T  4024247 tattcaccacgaaaatccaaaaattgcaggttggtcatcttagcaaatgcatgagagcttaacatcagctttcttcttcctgacaagtctacacttatgc 4024346  T
Q  309 ttctaatagcatcagtaccctaccattaatgtaaaagaaaaattt-caatcattgaaagccatatttttaaccaaaataacatatgttatctgaaatagc 407  Q
    |||||||| ||||||||||||  ||| ||||||| ||||||||||  ||| | | |||||| |||||||| ||||||| ||| | ||  ||| ||| |      
T  4024347 ttctaataacatcagtaccct-gcatgaatgtaagagaaaaatttaaaattagttaaagccgtatttttagccaaaatgacaaacgtcgtct-aaaaata 4024444  T
Q  408 caaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttctagggtcttcacta 494  Q
    |  ||  | |||||||||||||||| |||||||||| | ||   |||| ||||||||||  |||||| ||||||||||||| |||||    
T  4024445 cgtattatgtttaccttgtcattttccaatacatcacaaatgtcatcatgatcccataatcgactgcgttttctagggtctgcacta 4024531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 3816815 - 3816884
Alignment:
Q  411 atattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttc 480  Q
    ||||||||||||||||||||||||||||||||||| ||   |||||||| ||||||  |||||| |||||    
T  3816815 atattttttaccttgtcatttttcaatacatcataaatttcatcaggattccataatcgactgcgttttc 3816884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 494
Target Start/End: Original strand, 4001522 - 4001605
Alignment:
Q  411 atattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttctagggtcttcacta 494  Q
    |||||||||||||||||||||||||||||||   | ||   |||||||||||||||  |||| | ||| |||||||||||||||    
T  4001522 atattttttaccttgtcatttttcaatacatagcaaatgtcatcaggatcccataaccgacttcgtttactagggtcttcacta 4001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 3933892 - 3933804
Alignment:
Q  392 tgttatctgaaatagccaaatattttttaccttgtcatttttcaatacatcatagataatatcaggatcccataaatgactgcattttc 480  Q
    ||||||||||||  |||| ||| | ||||||||||||||||||||||||||| | ||   ||||  |||||||||  ||||||||||||    
T  3933892 tgttatctgaaaatgccatataatgtttaccttgtcatttttcaatacatcaaaaatgtcatcaacatcccataatcgactgcattttc 3933804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 3920671 - 3920620
Alignment:
Q  392 tgttatctgaaatagccaaatattttttaccttgtcatttttcaatacatca 443  Q
    ||||||||||||  |||| ||| | |||||||||||||||||||||||||||    
T  3920671 tgttatctgaaaatgccatataatgtttaccttgtcatttttcaatacatca 3920620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 3964796 - 3964684
Alignment:
Q  36 ttacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttagagg 135  Q
    ||||||| ||||||  ||| || ||||| ||| |||||||   ||||| ||||||||| || ||||| || ||||| |  ||||| |||||||| | |||    
T  3964796 ttacctgcactccatgccagagtttttcaactcgactatatgacaagtccaatataacgagtttctccgctgaaaattcatctggcaatgatttcaaagg 3964697  T
Q  136 gtaatgcatccaa 148  Q
    |||||||||||||    
T  3964696 gtaatgcatccaa 3964684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 494
Target Start/End: Original strand, 13396797 - 13397246
Alignment:
Q  30 attcaattacctgaactccacaccaaagcttttccacttgactataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattt 129  Q
    ||||||||||||| |||||||||||||||||||| ||  | |||||  |||||  || |||||||||||| ||  |||||||||||||||||||||||||    
T  13396797 attcaattacctgtactccacaccaaagcttttctacaaggctatatggcaagcccagtataacaagattatcaacagaaaacttctctgggaatgattt 13396896  T
Q  130 tagagggtaatgcatccaatgaagatatcttagatcatttggaaaaaattgaagcccttgaggaagaagttccaaatcgtatttaccatgaaaatccaaa 229  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||| | || ||||||||| ||||    
T  13396897 tagagggtaatgcatccaataaagatatcttagatcagttggaaaaaattgaagcccttgaggaagacgatccaaaccgtctatatcatgaaaatacaaa 13396996  T
Q  230 tatcgcaggttggtcatcttagcaaatacatgagggcttaactccaactccctaaatgatgacaagtctacacgtatgcttctaatagcatcagtaccct 329  Q
     ||  |||||||||||||||| |||||||| | |||||||||| || || ||||| || |||||||||||||| ||||||||||||||||||||||||||    
T  13396997 aatttcaggttggtcatcttatcaaatacaggcgggcttaacttcagcttcctaattgctgacaagtctacacttatgcttctaatagcatcagtaccct 13397096  T
Q  330 accattaatgtaaaagaaaaatttcaatcattgaaagccatatttttaaccaaaataacatatgttatctgaaatagccaaatattttttaccttgtcat 429  Q
      ||||| | ||||||||||   ||||            |||||||| |||||||| ||| ||||||||| |||| ||||||| ||||||||||||||||    
T  13397097 gtcattattataaaagaaaa---tcaa-----------aatattttttaccaaaatgacaaatgttatctaaaattgccaaat-ttttttaccttgtcat 13397181  T
Q  430 ttttcaatacatcatagataatatcaggatcccataaatgactgcattttctagggtcttcacta 494  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  13397182 ttttcaatacatcgtagataatatcaggatcccataatcgactgcattttctagggtcttcacta 13397246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 7031887 - 7031762
Alignment:
Q  71 ctataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttg 170  Q
    |||||| ||||| ||||| ||||||| || ||||||||||||||   ||| || ||||  | |||||||| |  |||| |||||||||| || || || |    
T  7031887 ctataaggcaagctcaatctaacaaggttttctgcagaaaacttggatggtaaggattccaaagggtaatactcccaacgaagatatctcagttcgttag 7031788  T
Q  171 gaaaaaattgaagcccttgaggaaga 196  Q
    | ||||||| ||||||| ||||||||    
T  7031787 gcaaaaattcaagccctcgaggaaga 7031762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 7037596 - 7037471
Alignment:
Q  71 ctataaagcaagttcaatataacaagattctctgcagaaaacttctctgggaatgattttagagggtaatgcatccaatgaagatatcttagatcatttg 170  Q
    |||||| ||||| ||||| ||||||| || ||||||||||||||   ||| || ||||  | |||||||| |  |||| |||||||||| || || || |    
T  7037596 ctataaggcaagctcaatctaacaaggttttctgcagaaaacttggatggtaaggattccaaagggtaatactcccaacgaagatatctcagttcgttag 7037497  T
Q  171 gaaaaaattgaagcccttgaggaaga 196  Q
    | ||||||| ||||||| ||||||||    
T  7037496 gcaaaaattcaagccctcgaggaaga 7037471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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