View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_17 (Length: 493)
Name: NF1314_high_17
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 63 - 485
Target Start/End: Original strand, 31684623 - 31685044
Alignment:
| Q |
63 |
tatccaatctaagaatcactaataacagccaattagataacatgtttcctggttctcnnnnnnnncactttagtttgttttcttttctctatccttcttt |
162 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||||||||| |||| |||||||||||||||||||| |
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| T |
31684623 |
tatccaatctaagaatcactaataacggccaattagataacatttttcctcgttctctttttat-cactttagtgtgttctcttttctctatccttcttt |
31684721 |
T |
|
| Q |
163 |
cataactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaagaattgtaaggattcaatat |
262 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31684722 |
cataactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacgaggaatgtgtaaagatattaaagaattgtaaggatgcaatat |
31684821 |
T |
|
| Q |
263 |
caacgaaaggtaaagaagggaaggtggttatcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttga |
362 |
Q |
| |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684822 |
caaagaaaggtaaagaagggaaggtggttatcttcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttga |
31684921 |
T |
|
| Q |
363 |
tatgttgatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactcca |
462 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684922 |
tatgtttatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactcca |
31685021 |
T |
|
| Q |
463 |
attttaggatcaacgcctatgat |
485 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
31685022 |
attttaggatcaacgtctatgat |
31685044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 187 - 470
Target Start/End: Original strand, 31704061 - 31704344
Alignment:
| Q |
187 |
aaattacagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaagaattgtaaggattcaatatcaacgaaaggtaaagaagggaagg |
286 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||| |||||| ||||||||| |||||||||| ||||||| | |
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| T |
31704061 |
aaattgcagtggatattgcatgattggaatgacgaggaatgtgtgaaaatattaaagaattgcaaggatgcaatatcaaagaaaggtaaacaagggaaag |
31704160 |
T |
|
| Q |
287 |
tggttatcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtatttgc |
386 |
Q |
| |
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|| || | || |||| ||| || || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31704161 |
tgattgtgatagacatggtgttggaaagtgagaaggaaagcattaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtacttgc |
31704260 |
T |
|
| Q |
387 |
aggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactccaattttagg |
470 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
31704261 |
aggaaaagagagaaacaagaaagaatggattaagttgatttcctctgctggttttagcgactacaagattactccaattttagg |
31704344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 129 - 470
Target Start/End: Original strand, 31735359 - 31735700
Alignment:
| Q |
129 |
actttagtttgttttcttttctctatccttctttcataactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacaaggaatgt |
228 |
Q |
| |
|
|||||||||| || |||||| |||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||| | |||||| |
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|
| T |
31735359 |
actttagtttattctcttttgcttatctttctttcataactcaaacaaagtcttaatgaaattgtagtggatattgcatgactggaatgacgaagaatgt |
31735458 |
T |
|
| Q |
229 |
gtaaagatattaaagaattgtaaggattcaatatcaacgaaaggtaaagaagggaaggtggttatcatcgacaaggttttcgacagtgagaagggaaaca |
328 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||| |||| ||| || || ||||||||||| ||| |
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| T |
31735459 |
gtgaagatattaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagaca |
31735558 |
T |
|
| Q |
329 |
ttaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttc |
428 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||| | | | ||||||||||||| | ||||||||||| |||| |||||||| |
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|
| T |
31735559 |
ataatgaatcggttgaaacaaaactcttctttgatatgttgatgatggtaacactcaccggaaaagagagaaccaagaaagaatgggttaaattgatttc |
31735658 |
T |
|
| Q |
429 |
ctctgctggttttagtgactacaagattactccaattttagg |
470 |
Q |
| |
|
|| || |||||| ||||||||||||| |||||||||||||| |
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|
| T |
31735659 |
ttcggccggtttttgtgactacaagataactccaattttagg |
31735700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 143 - 470
Target Start/End: Original strand, 31712427 - 31712754
Alignment:
| Q |
143 |
tcttttctctatccttctttcataactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaa |
242 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||| || ||||| | ||||| ||||| |
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|
| T |
31712427 |
tcttttgtttatctttctttcataactcaaacaaagtcttaatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaa |
31712526 |
T |
|
| Q |
243 |
gaattgtaaggattcaatatcaacgaaaggtaaagaagggaaggtggttatcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagtt |
342 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||| |||| ||| || || ||||||||||| ||| ||||||||||||| |
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|
| T |
31712527 |
gaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaataatgaatcagtt |
31712626 |
T |
|
| Q |
343 |
gaaacacaactcttctttgatatgttgatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggtttta |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||| || |||||||| | |||||||||| |
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|
| T |
31712627 |
gaaacacaactcttctttgatatgttgatgatggccctattaacaggaaaagagagaaatgagaaggaatggatgaaattgatttctttggctggtttta |
31712726 |
T |
|
| Q |
443 |
gtgactacaagattactccaattttagg |
470 |
Q |
| |
|
|||||||||||| || |||||| |||| |
|
|
| T |
31712727 |
atgactacaagataacaccaattctagg |
31712754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 193 - 462
Target Start/End: Original strand, 31715404 - 31715670
Alignment:
| Q |
193 |
cagtggatattgcatgattggaatgacaaggaatgtgtaaagatattaaagaattgtaaggattcaatatcaacgaaaggtaaagaagggaaggtggtta |
292 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| | | ||||||||||||||| |||||| ||| |
|
|
| T |
31715404 |
cagtggatattgcatgattggaatgatgaggaatgcgtaaagatattaaggaattgtaaggatgcaatagcgaagaaaggtaaagaaggaaaggtgatta |
31715503 |
T |
|
| Q |
293 |
tcatcgacaaggttttcgacagtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtatttgcaggaaa |
392 |
Q |
| |
|
|||| |||| ||| | || | |||||||||||| | |||||| | | ||||||||||||||||||||||| | |||||||| | | ||||| |
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|
| T |
31715504 |
tcatagacatggtggtggagaaagagaagggaaac---agtgaatcggctaaaacacaactcttctttgatatgctcatgatggtgttggccaccggaaa |
31715600 |
T |
|
| Q |
393 |
agagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactcca |
462 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||||||||||| || || | |||||||||||| |||||| |
|
|
| T |
31715601 |
agagagaaccaagaaagaatgggttaagttgatttcctctgcagggttcaatgactacaagataactcca |
31715670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 51858016 - 51858078
Alignment:
| Q |
7 |
agatgatgacacggttgactggctaaatcttactcgagagttatggttagttactatatccaa |
69 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
51858016 |
agatgatgacacggttgattggctaaatcttcctcgagacttatggttagttattatatccaa |
51858078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 30571106 - 30571178
Alignment:
| Q |
388 |
ggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactc |
460 |
Q |
| |
|
|||||||||||||| || ||||||||| ||| ||| ||| ||||||||||||||| |||||||||| |||| |
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|
| T |
30571106 |
ggaaaagagagaaatgaaaaagaatggtctaatttgtttttatctgctggttttagtaactacaagataactc |
30571178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 34865538 - 34865477
Alignment:
| Q |
8 |
gatgatgacacggttgactggctaaatcttactcgagagttatggttagttactatatccaa |
69 |
Q |
| |
|
||||||||| | |||||||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
34865538 |
gatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttattatatccaa |
34865477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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