View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_28 (Length: 434)
Name: NF1314_high_28
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 206 - 406
Target Start/End: Original strand, 4774941 - 4775141
Alignment:
| Q |
206 |
tttggggttaataccttaaataaacactaatttagcaatgactgattttcttaaaaggctnnnnnnntgatatattaacaaatcaggatcaactgtctca |
305 |
Q |
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| T |
4774941 |
tttggggttaatatcttaaataaacactaatttagcaatgactgattttcttaaaaggctaaaaaaatggtatattaacaaatcaggatcaactgtttca |
4775040 |
T |
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| Q |
306 |
gcataggtgtacgaaaccaacccatcaagattacagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcaccaagaccctccttt |
405 |
Q |
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| T |
4775041 |
gcataggtgtacgaaaccaacccatcaagattagagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcactaagaccctccttt |
4775140 |
T |
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| Q |
406 |
t |
406 |
Q |
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| T |
4775141 |
t |
4775141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 4774745 - 4774870
Alignment:
| Q |
9 |
gattatactggagaaacatttcgcaggagataatctcttccccttacttaaatgcatcaatgtctttcttttaagaatcgatatcaatttttgtttacgg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4774745 |
gattttactggagaaacatttcgcaggagataatctcttccccttacttaaatgcatcaatgtctttcttttaagaatcgatatcaatttttgtttacgg |
4774844 |
T |
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| Q |
109 |
aacaataaaataaaccgtttccttca |
134 |
Q |
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| T |
4774845 |
aacaataaaataaaccgtttccttca |
4774870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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