View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_high_32 (Length: 428)
Name: NF1314_high_32
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_32 |
 | |
|
| [»] scaffold0595 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 8328025 - 8328414
Alignment:
| Q |
30 |
ataagtgtagacgaaaaggatgagactgaaatgagaaatgcaaaggaacacgataggatggcattacataggaagctgtaaaaagttgacatgtgaaaca |
129 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8328025 |
ataagtgtagaggaaaaggatgagactgaaatgagaaatgcaaaggaacacgataggatggcattacataggaagctgtaaaaagttgacatgtgaaaca |
8328124 |
T |
|
| Q |
130 |
aacaagttacctcggaacatgaaatctttctttgtaaagacataaacttacgcacgaggaacactaatcatatgcacttctcctttgtgtttctttcttg |
229 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8328125 |
aaaaagttacctcggaacatgaaatctttctttgtaaagacacaaacttacgcacgaggaacactaatcatatgcacttctcctttgtgtttctttcttg |
8328224 |
T |
|
| Q |
230 |
tttgaggacttgctatctgctcccgaacttgaggaactctcgtaaccatgatattttttgtctttaataatgatatggatatggattatttcctcatgtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8328225 |
tttgaggacttgctatctgctcccgaacttgaggaactcttgtaaccatgatattttttgtctttaataatgatatggatatggattatttcctcatgtt |
8328324 |
T |
|
| Q |
330 |
atgtttggctagccaaaccttg-tccctcccatctattcgtgcatctcatttacgtaggaatttgcaagattctgagttttgcgcctttg |
418 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8328325 |
atgtttggctagccaaacattgatccctcccatctattcgtgcatctcatttacgtaggaatttgcaagattctgagttttgcgcctttg |
8328414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 2009 - 1618
Alignment:
| Q |
30 |
ataagtgtagacgaaaaggatgagactgaaatgagaaatgcaaaggaacacgataggatggcattacataggaagctgtaaaaagttgacatgtgaaaca |
129 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2009 |
ataagtgtagaggaaaaggatgagactgaaatgagaaatgcaaaggaacacgataggatggcattacataggaagctgtaaaaagttgacatgtgaaaca |
1910 |
T |
|
| Q |
130 |
aacaagttacctcggaacatgaaatctttctttgtaaagacataaacttacgcacgaggaacactaatcatatgcacttctcctttgtgtttctttcttg |
229 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1909 |
aaaaagttacctcggaacatgaaatctttctttgtaaagacacaaacttacgcacgaggaacactaatcatatgcacttctcctttgtgtttctttcttg |
1810 |
T |
|
| Q |
230 |
tttgaggacttgctatctgctcccgaacttgaggaactctcgtaaccatgat--attttttgtctttaataatgatatggatatggattatttcctcatg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1809 |
tttgaggacttgctatctgctcccgaacttgaggaactcttgtaaccatgattatttttttgtctttaataatgatatggatatggattatttcctcatg |
1710 |
T |
|
| Q |
328 |
ttatgtttggctagccaaaccttg-tccctcccatctattcgtgcatctcatttacgtaggaatttgcaagattctgagttttgcgcctttg |
418 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1709 |
ttatgtttggctagccaaacattgatccctcccatctattcgtgcatctcatttacgtaggaatttgcaagattctgagttttgcgcctttg |
1618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University