View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_high_38 (Length: 419)
Name: NF1314_high_38
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 33696094 - 33696324
Alignment:
| Q |
90 |
ttcaatgccttcaatatttactccaatcttcaaattcttctataaacattaataataattcctatgaccaaaatgccatgatcacaaacatggaacaaga |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696094 |
ttcaatgccttcaatatttactccaatcttcaaattcttctataaacattaataataattcctatgaccaaaatgccatgatcacaaacatggaacaaga |
33696193 |
T |
|
| Q |
190 |
acaacctttaagtttattaaacacaatctctaatgtgaaaaagaacaccataatggactgttcacaactggatagtactcatgcagcctcattttctcaa |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696194 |
acaacctttaagtttattaaacacaatctctaatgtgaaagagaacaccataatggactgttcacaactggatagtactcatgcagcctcattttctcaa |
33696293 |
T |
|
| Q |
290 |
ccactccaccaccaaagtgtgctaccccact |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33696294 |
ccactccaccaccaaagtgtgctaccccact |
33696324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 45548718 - 45548631
Alignment:
| Q |
7 |
tcgaataatatgatgttataagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcacattcaa |
94 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45548718 |
tcgaaaaatatgatgttataagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcacattcaa |
45548631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University