View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_4 (Length: 641)
Name: NF1314_high_4
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 10 - 612
Target Start/End: Original strand, 8156347 - 8156943
Alignment:
| Q |
10 |
ataatactcagatatgcagacactcattttcttgtttggagatgtctgctattattannnnnnnnnngaagaatgtctgctattaattttatagagctac |
109 |
Q |
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| T |
8156347 |
ataatactcagatacgcagacactcatttttttgtttgaagatgtctgctattattttattttttttgaagaatgtctgctattaattttatagagctac |
8156446 |
T |
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| Q |
110 |
ttttatcctcattgtttcaaaaccacaccccatccggatgaagaaaaatgcgtccaaattgataaatctggggagaactgttttttctctggctggatgg |
209 |
Q |
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| T |
8156447 |
ttttatcctcattg------aaccacaccccatccggatgaagaaaaatgcgtccaaattgataaatctggggagaactgttttttctctggctggatgg |
8156540 |
T |
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| Q |
210 |
gtaaatccggacggaagcgtttttgaagaattatgggcgtgggtgtaaaatctcttaactttacctgatacggcagcacatgtgttttctatccagtttc |
309 |
Q |
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| T |
8156541 |
gtaaatccggacggaagcgtttttgaagaattatgggcgtgggagaaaaaactcttaactttacatgatacggcagtacacgtgttttctatccagtttc |
8156640 |
T |
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| Q |
310 |
aattgtgtttcttagacctggcatattttgtagttaaaaactcactttgcttataagaatttcattactaaaatttcagcaataatatacttcaagtaca |
409 |
Q |
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| T |
8156641 |
aattgtgtttcttagacctggcatattttgtagttaaaaattcactttgcttataagaatttcattactaaaatttcagcaataatatacttcaagtaca |
8156740 |
T |
|
| Q |
410 |
atgacagaagattgttgcctagttagagttttcactaacagttgtattcaacatcttactatcttagtcctagctatgtatacaagagttgtactacaac |
509 |
Q |
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| T |
8156741 |
atgacagaacattgttgcctagttagagttttcactaacagttgtattcaacatcttactatcttagtcctagctatgtatacaagagttgtactacaac |
8156840 |
T |
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| Q |
510 |
tacactactaattgggataataacgagagaggtactggaacatgaacttgtgtcacagcatgggtcaagagcactgcaaaattcacatggagaacatact |
609 |
Q |
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| T |
8156841 |
tacactactaattgggataataacgagagaggtactggaacatgaacttctgtcacagcatgggtcaagagcactgcaaaattcacatggagaacatact |
8156940 |
T |
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