View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_42 (Length: 399)
Name: NF1314_high_42
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 28270123 - 28269736
Alignment:
| Q |
1 |
catgtcatgaaatagtgcttcttttcaaagacttttgtttcctggcagtacttatcattctgagatgctgaaaattagtgactgttgcagaaggcaaggc |
100 |
Q |
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| T |
28270123 |
catgtcatgaaatagtgcttcttttcaaagacttttgtttc-tggcagtacttatcattctgagatgctgaaaattagtgactgttgcagaaggcaaggc |
28270025 |
T |
|
| Q |
101 |
acacaaagacaaaacttgtcattcactctttcttgggatcccttgcaagatagagggaagagagagggtgataagggatcttaatttggtgcagtatgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28270024 |
acacaaagacaaaacttgtcattcactctttcttgggatcccttgcaagatagagggaagagagagggtgagaagggatcttaatttggtgcagtatgta |
28269925 |
T |
|
| Q |
201 |
atcaatctcggccattgatttgaaatcggacgatttagattactcattcactatataaaaaatgatctgaccattggtttagattgaagggtcaagattg |
300 |
Q |
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| T |
28269924 |
atcaatctcggccattgatttgaaatcggacgatttagattactcattcactatataaaaaatgatctgaccattggtttagattgaagggtcaagatta |
28269825 |
T |
|
| Q |
301 |
gtaactgtgtgccataattattgtagggaatctgtttcggatgcgaagccagtttattagatgaccttaaatgtttctgttctcctatg |
389 |
Q |
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| T |
28269824 |
gtaactgtgtgccataattattgtagggaatctgtttcggatgcgaagccagtttattagatgaccttaaatgtttctgctctcctatg |
28269736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 6041595 - 6041640
Alignment:
| Q |
198 |
gtaatcaatctcggccattgatttgaaatcggacgatttagattac |
243 |
Q |
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| T |
6041595 |
gtaatcaatctcggccattgatttaaaattgaacgaattagattac |
6041640 |
T |
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