View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_high_45 (Length: 380)

Name: NF1314_high_45
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_high_45
NF1314_high_45
[»] chr3 (8 HSPs)
chr3 (1-304)||(47763913-47764209)
chr3 (35-188)||(50719089-50719236)
chr3 (35-188)||(50793612-50793759)
chr3 (38-82)||(50719046-50719090)
chr3 (38-82)||(50793758-50793802)
chr3 (231-277)||(53351960-53352006)
chr3 (204-240)||(24761961-24761997)
chr3 (204-240)||(24815937-24815973)
[»] chr1 (4 HSPs)
chr1 (28-164)||(52945841-52945976)
chr1 (28-164)||(52938209-52938344)
chr1 (26-159)||(44513221-44513354)
chr1 (205-304)||(25223242-25223342)
[»] chr8 (6 HSPs)
chr8 (39-188)||(9885367-9885511)
chr8 (39-159)||(4969940-4970060)
chr8 (200-304)||(5662584-5662688)
chr8 (28-74)||(9885522-9885569)
chr8 (28-74)||(4969882-4969929)
chr8 (205-304)||(8158484-8158583)
[»] chr2 (4 HSPs)
chr2 (35-159)||(27534858-27534982)
chr2 (205-304)||(24454538-24454637)
chr2 (26-74)||(27534772-27534821)
chr2 (244-304)||(997882-997942)
[»] chr7 (2 HSPs)
chr7 (40-159)||(2439964-2440083)
chr7 (205-240)||(26910044-26910079)
[»] chr5 (2 HSPs)
chr5 (205-300)||(22004459-22004554)
chr5 (205-304)||(30463049-30463149)
[»] chr4 (1 HSPs)
chr4 (212-257)||(38014371-38014415)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 47764209 - 47763913
Alignment:
Q  1 tggaatgccattcatagaattatatagatttatagtcttttttatttgtatgaatgatgtaatacactatctttatcaccgtactaatgacttactgcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47764209 tggaatgccattcatagaattatatagatttatagtcttttttatttgtatgaatgatgtaatacactatctttattaccgtactaatgacttactgcta 47764110  T
Q  101 tgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgccccgcgaggcacgggtcggcgttctagtttatatttaatcc 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||       |||||||  ||||||||||||||||| |||| |    
T  47764109 tgaagacttatacaaatttctatattatttttaatttctacaatctatatgacccgtgcc------tgcacgggagggcgttctagtttatatctaat-c 47764017  T
Q  201 ctacttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcat 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47764016 ctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcat 47763917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 50719089 - 50719236
Alignment:
Q  35 gtcttttttatttgtatgaatgatgtaatacactatctttatc---accgtactaatgacttactgctatgaagacttatacaaatttctatattatttt 131  Q
    ||||||||||||||||||||||||||||||||||||||| |||   |  |||||||||||||| ||||| |    ||| || | |||| ||||||||| |    
T  50719089 gtcttttttatttgtatgaatgatgtaatacactatcttcatcattattgtactaatgacttattgctacg----cttctatagatttttatattattgt 50719184  T
Q  132 tagtttctacaatttatatgacccgtgccccgcgaggcacgggtcggcgttctagtt 188  Q
      ||||||||||| ||||||||||||     |||  |||||||||||||||||||||    
T  50719185 cggtttctacaatctatatgacccgt-----gcggcgcacgggtcggcgttctagtt 50719236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 50793759 - 50793612
Alignment:
Q  35 gtcttttttatttgtatgaatgatgtaatacactatctttatc---accgtactaatgacttactgctatgaagacttatacaaatttctatattatttt 131  Q
    ||||||||||||||||||||||||||||||||||||||| |||   |  |||||||||||||| ||||| |    ||| || | |||| ||||||||| |    
T  50793759 gtcttttttatttgtatgaatgatgtaatacactatcttcatcattattgtactaatgacttattgctacg----cttctatagatttttatattattgt 50793664  T
Q  132 tagtttctacaatttatatgacccgtgccccgcgaggcacgggtcggcgttctagtt 188  Q
      ||||||||||| ||||||||||||     |||  |||||||||||||||||||||    
T  50793663 cggtttctacaatctatatgacccgt-----gcggcgcacgggtcggcgttctagtt 50793612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 50719046 - 50719090
Alignment:
Q  38 ttttttatttgtatgaatgatgtaatacactatctttatcaccgt 82  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||    
T  50719046 ttttttatttgtatgaaagatgtaatatactatctttattaccgt 50719090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 50793802 - 50793758
Alignment:
Q  38 ttttttatttgtatgaatgatgtaatacactatctttatcaccgt 82  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||    
T  50793802 ttttttatttgtatgaaagatgtaatatactatctttattaccgt 50793758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 53352006 - 53351960
Alignment:
Q  231 cctaaacctagaatttttaggcgccaatcaaggaggtccgttggatc 277  Q
    ||||||||||||   |||||||||||||||||| |||||||||||||    
T  53352006 cctaaacctagatagtttaggcgccaatcaaggtggtccgttggatc 53351960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 24761997 - 24761961
Alignment:
Q  204 cttaacattgctaataactttgcaaaacctaaaccta 240  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  24761997 cttaacattgctaatgactttgcaaaccctaaaccta 24761961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 24815937 - 24815973
Alignment:
Q  204 cttaacattgctaataactttgcaaaacctaaaccta 240  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  24815937 cttaacattgctaatgactttgcaaaccctaaaccta 24815973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 52945841 - 52945976
Alignment:
Q  28 atttatagtcttttttatttgtatgaatgatgtaatacactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatatta 127  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  52945841 atttatagtctttt-tatttgtatgaatgatgtaatacactatctttattaccgtactaatgacttattgctatgaaggcttatacaaatttctatatta 52945939  T
Q  128 tttttagtttctacaatttatatgacccgtgccccgc 164  Q
    || |  ||||||||||| |||||||||||||| ||||    
T  52945940 ttgtcggtttctacaatctatatgacccgtgcgccgc 52945976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 52938209 - 52938344
Alignment:
Q  28 atttatagtcttttttatttgtatgaatgatgtaatacactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatatta 127  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||||||    
T  52938209 atttatagtctttt-tatttgtatgaatgatgtaatacactatctttattaccatactaatgacttattgctatgaaggcttatacaaatttctatatta 52938307  T
Q  128 tttttagtttctacaatttatatgacccgtgccccgc 164  Q
    || |  ||||||||||| |||||||||||||| ||||    
T  52938308 ttgtcggtttctacaatctatatgacccgtgcgccgc 52938344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 44513221 - 44513354
Alignment:
Q  26 agatttatagtcttttttatttgtatgaatgatgtaatacactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatat 125  Q
    ||||||||| |||||||||||| ||  |||||||||||| ||||||||||| ||||||||||||| ||| | ||| |||||| |||||||||||||||||    
T  44513221 agatttatactcttttttatttataccaatgatgtaataaactatctttattaccgtactaatgatttatttctacgaagacatatacaaatttctatat 44513320  T
Q  126 tatttttagtttctacaatttatatgacccgtgc 159  Q
    |||| |||||||||||||| ||||||||||||||    
T  44513321 tattgttagtttctacaatctatatgacccgtgc 44513354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 25223242 - 25223342
Alignment:
Q  205 ttaacattgctaataactttgcaaaacc-taaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctc 303  Q
    |||||| ||||||| || |||||||||| |||| ||||   |||| ||||||||| ||||||  ||||| |||||||| | || |||| |||||||||||    
T  25223242 ttaacaatgctaattaccttgcaaaaccctaaagctagccattttgggcgccaattaaggagagccgtttgatcaaatgagctagctaagcattcatctc 25223341  T
Q  304 a 304  Q
    |    
T  25223342 a 25223342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 9885511 - 9885367
Alignment:
Q  39 tttttatttgtatgaatgatgtaatacactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttc 138  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||| |||||||||| |||||||| |  ||||     
T  9885511 tttttatttgtatgaatgatgtaatgcactatctttattactgtactaatgacttattgctatgaagacttctacaaatttcaatattattgtcggtttg 9885412  T
Q  139 tacaatttatatgacccgtgccccgcgaggcacgggtcggcgttctagtt 188  Q
    |||||| ||||||||||||     |||  |||||||||||||||||||||    
T  9885411 tacaatctatatgacccgt-----gcggcgcacgggtcggcgttctagtt 9885367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 4969940 - 4970060
Alignment:
Q  39 tttttatttgtatgaatgatgtaatacactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttc 138  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||| |||||||||| |||||||| |  ||||     
T  4969940 tttttatttgtatgaatgatgtaatgcactatctttattactgtactaatgacttattgctatgaagacttctacaaatttcaatattattgtcggtttg 4970039  T
Q  139 tacaatttatatgacccgtgc 159  Q
    |||||| ||||||||||||||    
T  4970040 tacaatctatatgacccgtgc 4970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 200 - 304
Target Start/End: Original strand, 5662584 - 5662688
Alignment:
Q  200 cctacttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattca 299  Q
    |||| |||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  5662584 cctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattca 5662683  T
Q  300 tctca 304  Q
    |||||    
T  5662684 tctca 5662688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 9885569 - 9885522
Alignment:
Q  28 atttatagtctttttt-atttgtatgaatgatgtaatacactatcttt 74  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  9885569 atttatagtctttttttatttgtatgaatgatgtaatatactatcttt 9885522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 4969882 - 4969929
Alignment:
Q  28 atttatagtctttt-ttatttgtatgaatgatgtaatacactatcttt 74  Q
    |||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  4969882 atttatagtctttttttatttgtacgaatgatgtaatatactatcttt 4969929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 8158484 - 8158583
Alignment:
Q  205 ttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctca 304  Q
    |||||| ||||||| || ||||||||||||||||||    |||| ||||||||| ||| ||| ||||| |||||||| | || ||||  |||||||||||    
T  8158484 ttaacaatgctaattaccttgcaaaacctaaacctaagtattttgggcgccaattaagcagggccgtttgatcaaatgagctagctaatcattcatctca 8158583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 35 - 159
Target Start/End: Original strand, 27534858 - 27534982
Alignment:
Q  35 gtcttttttatttgtatgaatgatgtaatacactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttag 134  Q
    ||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||| ||||||||||| || |||  ||||| |||||||| | ||    
T  27534858 gtcttttttatttgtatgaatgatgtaatgcactatctttattattgtactaatgacttattgctatgaagatttctactgatttcgatattattgtcag 27534957  T
Q  135 tttctacaatttatatgacccgtgc 159  Q
    ||| |||||| ||||||||||||||    
T  27534958 tttgtacaatctatatgacccgtgc 27534982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 24454538 - 24454637
Alignment:
Q  205 ttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctca 304  Q
    ||||||||||||| | | ||||||| |||||||||| | |||||||||||||| |||||||| ||||||||||  ||||| ||||| | |||||||||||    
T  24454538 ttaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatcatttggcttgacattcatctca 24454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 27534772 - 27534821
Alignment:
Q  26 agatttatagtctttt-ttatttgtatgaatgatgtaatacactatcttt 74  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  27534772 agatttatagtctttttttatttgtatgaatgatgtaatatactatcttt 27534821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 997882 - 997942
Alignment:
Q  244 tttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctca 304  Q
    ||||||||||||||| ||||| | ||||| |||||||||||||| ||| ||||||||||||    
T  997882 tttttaggcgccaattaaggatggccgtttgatcaaatcatctgactaagcattcatctca 997942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 2439964 - 2440083
Alignment:
Q  40 ttttatttgtatgaatgatgtaatacactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttct 139  Q
    |||||||||| |  || |||||||||||||||||||| | ||||||||||||||| || |||||||||||||||| ||||||||| |||| |  ||||||    
T  2439964 ttttatttgtttatataatgtaatacactatctttattatcgtactaatgacttattgttatgaagacttatacatatttctataatattgtcggtttct 2440063  T
Q  140 acaatttatatgacccgtgc 159  Q
    ||||| ||||||||||||||    
T  2440064 acaatctatatgacccgtgc 2440083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 26910079 - 26910044
Alignment:
Q  205 ttaacattgctaataactttgcaaaacctaaaccta 240  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26910079 ttaacattgctaataactttgcaaaccctaaaccta 26910044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 22004554 - 22004459
Alignment:
Q  205 ttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcat 300  Q
    |||||||||||||| | |||||||| ||||||||||||   |||||||||||||||||| |||||||||||||  ||||| |||||  ||||||||    
T  22004554 ttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcatcatttggctcagcattcat 22004459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 30463149 - 30463049
Alignment:
Q  205 ttaacattgctaataactttgcaaaacc-taaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctc 303  Q
    |||||| ||||||| || |||||||||| |||||||||   |||| ||||||||| ||||||  ||||| |||||||| | || |||| |||||||||||    
T  30463149 ttaacaatgctaattaccttgcaaaaccctaaacctagccattttgggcgccaattaaggagagccgtttgatcaaatgagctagctaagcattcatctc 30463050  T
Q  304 a 304  Q
    |    
T  30463049 a 30463049  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 38014371 - 38014415
Alignment:
Q  212 tgctaataactttgcaaaacctaaacctagaatttttaggcgccaa 257  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||    
T  38014371 tgctaatgactttacaaaacctaaacctag-atttttaggcgccaa 38014415  T

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