View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_high_48 (Length: 374)
Name: NF1314_high_48
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_48 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 150 - 353
Target Start/End: Original strand, 39797677 - 39797883
Alignment:
| Q |
150 |
tcattacttttatcaggatg---caatgttttaaagaatttttctgcttcactgttttcacttctatcctgattagttatcactttctgagttgaaaggt |
246 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39797677 |
tcattacttttatcaggatgatgcaatgttttaaagaatttttctgcttcactgttttcacttctatcctgattagttatcactttctgagtagaaaggt |
39797776 |
T |
|
| Q |
247 |
tattgttttatttttcaggtatccaagggtggcagttcaacattttcgtatgtactagtagacacccaaacgtaagccagttacttgtatgttttatcct |
346 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39797777 |
tattcttttatttttcaggtatccaagggtggcagttcaacattttcgtatgtactagtagacacccaaacgtaagccagttacttgtatgttttatcct |
39797876 |
T |
|
| Q |
347 |
ttgcttc |
353 |
Q |
| |
|
||||||| |
|
|
| T |
39797877 |
ttgcttc |
39797883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 39797524 - 39797649
Alignment:
| Q |
30 |
gatacttcctttattgttgtaagataagattcaccttattcattttattcatttctatttgaaattgaaatggatgattcattgcttttcttctcaaact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39797524 |
gatacttcctttattgttgtaagataagattcaccttattcattttattcatttctatttgaaattgaaatggatgattcattgcttttcttctcaaact |
39797623 |
T |
|
| Q |
130 |
tgtagcattaagcatgtatatcatta |
155 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39797624 |
tgtagcattaagcatgtatatcatta |
39797649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University