View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_50 (Length: 368)
Name: NF1314_high_50
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 68 - 357
Target Start/End: Original strand, 33236964 - 33237253
Alignment:
| Q |
68 |
gtaacattatcaacagatgataaccacgcctcgtggcgaacgttatgtgcatcaaacaacaatgtggatacttcaacagctgaaaacctattcatgggat |
167 |
Q |
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| T |
33236964 |
gtaacattatcaacagatgataaccacgcctcgtggcgaacgttatgtgcatcaaacaacaatgtggatacttcaacagctgaaaacctattcatgggat |
33237063 |
T |
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| Q |
168 |
gcaaaagcacttatagctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaacttgttaactctc |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33237064 |
gcaaaagcacttatagctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaacttgttaactctc |
33237163 |
T |
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| Q |
268 |
tgaaaatactgaatcaaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatattc |
357 |
Q |
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| T |
33237164 |
tgaaaatactgaatcaaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatattc |
33237253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 33221179 - 33221273
Alignment:
| Q |
120 |
caaacaacaatgtggatacttcaacagctgaaaacctattcatgggatgcaaaagcacttatagctctagctgctttcactttggaatatggaaa |
214 |
Q |
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| T |
33221179 |
caaacaacactatggattcttcaaaacctgagatcttactcatgggatgcaaaagcacttataactctagctgctttcactttggaatatggaaa |
33221273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 83 - 356
Target Start/End: Original strand, 26376264 - 26376537
Alignment:
| Q |
83 |
gatgataaccacgcctcgtggcgaacgttatgtgcatcaaacaacaatgtggatacttcaacagctgaaaacctattcatgggatgcaaaagcacttata |
182 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||| || |
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| T |
26376264 |
gatgataaccacgcctcgtggcgaacattatgtgccccaaacaacaatgtggaaacttcaacaattgaaaacctactcacgggatgcaaaagcacttgta |
26376363 |
T |
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| Q |
183 |
gctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaacttgttaactctctgaaaatactgaatc |
282 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
26376364 |
gctctagctgctttcactttgaaatatggaaatcttttgcacctcattgagacttcaacctcatcagatcaacttgttaactctttgaaacaacttaatc |
26376463 |
T |
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| Q |
283 |
aaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatatt |
356 |
Q |
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|||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26376464 |
aaattcaaaatagaaaggtcattgttcctgtcacagatttggtggagttgataatggaagtgcttctgcatatt |
26376537 |
T |
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