View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_52 (Length: 361)
Name: NF1314_high_52
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_52 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 29 - 343
Target Start/End: Complemental strand, 2593073 - 2592762
Alignment:
| Q |
29 |
acaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagataga |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
2593073 |
acaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatata------gatatagagatagataga |
2592980 |
T |
|
| Q |
129 |
gcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaat |
228 |
Q |
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|||| | ||||| |||| | |||| ||||||||||| ||||||||||||| ||||||| |||| |||||||||||| |||||||||| || |||||||| |
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| T |
2592979 |
ccaaagaatatacatagtagcaaaa-ggatttaactaaattacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctacaat |
2592881 |
T |
|
| Q |
229 |
tttgatgattgtagaaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacct----attacca |
324 |
Q |
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|||||||||| ||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||| | |
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| T |
2592880 |
tttgatgattatagaaatgaaaattttaggaagctaagttgaaaccaatttccttgaacctcttctcagttttcttttcaatttcgcctattaattacta |
2592781 |
T |
|
| Q |
325 |
caacaactacatcatcaac |
343 |
Q |
| |
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||||||||||||||||||| |
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| T |
2592780 |
caacaactacatcatcaac |
2592762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 29 - 316
Target Start/End: Complemental strand, 2624601 - 2624311
Alignment:
| Q |
29 |
acaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatat-----agagatag |
123 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||| |||| |||||| ||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
2624601 |
acaagactacttcaataagtgtcatctccttaactccactttttttttaggtgggagtcatggttttattcatatatgatatgatatgatatagagaaat |
2624502 |
T |
|
| Q |
124 |
atagagcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcct |
223 |
Q |
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||||| ||| ||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||| |
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| T |
2624501 |
atagaataaagattatacatagtagagaaaaggatttaactatattacaatataaacatatagtaattagcatataaattgtgttatgttagaaaaacct |
2624402 |
T |
|
| Q |
224 |
acaattttgatgattgtagaaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacc |
316 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
2624401 |
acaattttgatgattgtagaaatg--attttttggaagctaaggtgaaaccaatttctctgaacttcttctcaattttcttttcaatttcacc |
2624311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 2635047 - 2634879
Alignment:
| Q |
29 |
acaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagataga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2635047 |
acaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatatgatatagaaatagataga |
2634948 |
T |
|
| Q |
129 |
gcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcata |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2634947 |
gcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcata |
2634879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 169 - 340
Target Start/End: Original strand, 2568334 - 2568503
Alignment:
| Q |
169 |
tacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaattttgatgattgtagaaatgaaatttttaagaagctaaggt |
268 |
Q |
| |
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||||| ||||| |||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
2568334 |
tacaaaataactatatagtaattaacataggaattgtcttatgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttagaagctaaggg |
2568433 |
T |
|
| Q |
269 |
gaaaccaatttccctgaacctcttctcaattttcttttcaatttcacctattaccacaacaactacatcatc |
340 |
Q |
| |
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||||||||||| | |||||| ||||||||| ||||||||||||||| ||| |||||||| ||||||||| |
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| T |
2568434 |
acaaccaatttccgtaaacctc--ctcaattttattttcaatttcacctgttatcacaacaagtacatcatc |
2568503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 2624722 - 2624631
Alignment:
| Q |
207 |
ttatgttagaaaagcctacaattttgatgattgtagaaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaat |
298 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624722 |
ttatgttagaaaagcctacaattttcataattgtagaaatgaaatttttaggaagctaaggtgaaaccaatttccctgaacctcttctcaat |
2624631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 311
Target Start/End: Original strand, 2671688 - 2671846
Alignment:
| Q |
149 |
aaaaaaggatttaactatattacaatataacgatatagtaattagcataggaattgtcttatgttagaaaagcctacaattttgatgattgtagaaatga |
248 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||| ||||||| |||||||||||| |||||| ||||| || |||||||||||||||||| | |||| |
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| T |
2671688 |
aaaaaaagatgtaactatattacaatagaacc-----gtaattaacataggaattgtgctatgtttgaaaaaccaacaattttgatgattgtacagatga |
2671782 |
T |
|
| Q |
249 |
aatttttaagaagct-aaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatt |
311 |
Q |
| |
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|| ||| |||||| |||| | || |||| ||| | ||||||||||||||||||||||||||| |
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| T |
2671783 |
aaacttttggaagctaaaggagcaaacaatctccttaaacctcttctcaattttcttttcaatt |
2671846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 2595962 - 2596043
Alignment:
| Q |
243 |
aaatgaaatttttaagaagctaaggtgaaaccaatttccctgaacctcttctcaattttcttttcaatttcacctattacca |
324 |
Q |
| |
|
||||||||||||| |||||||| | || | ||||| ||| |||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
2595962 |
aaatgaaatttttcggaagctaaaggaaatctaattttcctaaacctcttctcatttttcttttcaattttacctattacca |
2596043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 2440872 - 2440818
Alignment:
| Q |
287 |
cctcttctcaattttcttttcaatttcacctattaccacaacaactacatcatcaa |
342 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||||| ||||||||| |
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|
| T |
2440872 |
cctcttctcatttttctttt-aatttcacatattaccacaacaactccatcatcaa |
2440818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 2568258 - 2568324
Alignment:
| Q |
44 |
taagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatat |
110 |
Q |
| |
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|||||||||||||||||||||| ||||| || ||||| |||||| | ||||| ||||||||||||| |
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|
| T |
2568258 |
taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatatatgatat |
2568324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 2671592 - 2671633
Alignment:
| Q |
39 |
ttcaataagtgtcatctccctaactccgcttattttctaggt |
80 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
2671592 |
ttcaataagtgtcatctccctaactccccttattttcaaggt |
2671633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 4962 - 5130
Alignment:
| Q |
29 |
acaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgtgagccatggttttattcatatatgatatgatatagagatagataga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4962 |
acaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatatgatatagaaatagataga |
5061 |
T |
|
| Q |
129 |
gcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcata |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5062 |
gcaaaaattatacttagttgaaaaaaggatttaactatattacaatataacgatatagtaattagcata |
5130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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