View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_60 (Length: 344)
Name: NF1314_high_60
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_60 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 25793304 - 25793625
Alignment:
| Q |
1 |
tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25793304 |
tttagggctgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc |
25793403 |
T |
|
| Q |
101 |
aattggtaaatttatcatttttcatacataatctgaccactaggaacnnnnnnntattatagagtttcttgaaacggccgaaaatttagtaacttgcagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
25793404 |
aattggtaaatttatcatttttcatacataatctgaccactaggaacaaaaaaatattaaagagtttcttgaaatggccgaaaatttagtaacttgcagt |
25793503 |
T |
|
| Q |
201 |
ccttcaaaatcatgatacggagggagtataatgcttaaatttttgtcccattttctgataatagtttactgcttccatttagtctttcttgaattcaata |
300 |
Q |
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||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25793504 |
ccttccaaatcatgagatggagggagtataatgcttaaatttttgtcccattttctgataatagtttactgcttccatttagtctttcttgaattcaata |
25793603 |
T |
|
| Q |
301 |
aaatgtatgaatctttctgctg |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
25793604 |
aaatgtatgaatctttctgctg |
25793625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10365866 - 10365757
Alignment:
| Q |
1 |
tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc |
100 |
Q |
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|||||||||| ||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| | || |||||||| |
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| T |
10365866 |
tttagggttgcgtttatattgtcgatgcatacaaagtttattggtcaagttgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagc |
10365767 |
T |
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| Q |
101 |
aattggtaaa |
110 |
Q |
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| |||||||| |
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| T |
10365766 |
agttggtaaa |
10365757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10136450 - 10136539
Alignment:
| Q |
20 |
tgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
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|||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| | || ||||||||||||||||| |
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| T |
10136450 |
tgtttaagcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagcaattggtaa |
10136539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10212912 - 10213001
Alignment:
| Q |
20 |
tgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
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|||| |||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||| || |||||||||||||| |
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| T |
10212912 |
tgtttaagcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctctggtcgaagcaattggtaa |
10213001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10378313 - 10378208
Alignment:
| Q |
1 |
tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc |
100 |
Q |
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|||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| | | |||||||| |
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| T |
10378313 |
tttagggttgcgtttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagc |
10378214 |
T |
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| Q |
101 |
aattgg |
106 |
Q |
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|||||| |
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| T |
10378213 |
aattgg |
10378208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 10133835 - 10133918
Alignment:
| Q |
26 |
agcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||| ||| ||| || |||||||||||||| |
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| T |
10133835 |
agcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaatatggttttgcgtctggtcgaagcaattggtaa |
10133918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 10101994 - 10102078
Alignment:
| Q |
25 |
aagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| || || || ||||||||||| |
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| T |
10101994 |
aagcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctcaggtcgacgcaattggtaa |
10102078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 10075062 - 10075098
Alignment:
| Q |
51 |
tgtgtcaaaggagttcacactggaaagatggttctgc |
87 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
10075062 |
tgtgtcaaaggagttcacactggaaatatggttctgc |
10075098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 84896 - 84952
Alignment:
| Q |
53 |
tgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
84896 |
tgtcaaaggagttcacactggaaagatggttctgaggctggttgaagcaattggtaa |
84952 |
T |
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