View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_66 (Length: 328)
Name: NF1314_high_66
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 48315270 - 48315405
Alignment:
| Q |
164 |
agcgtggaaaatatatttgagcttgaaaataaaccaagttttcttatagcataagatatctcaagcttagaatgagtcaaagtcaagtatagaagcttac |
263 |
Q |
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| T |
48315270 |
agcgtggaaaatatatttgagcttgaaaatagaccaagttttcttatagcataagatatctcaagcttagaatgagtcaaagtcaagtatagaagcttcc |
48315369 |
T |
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| Q |
264 |
aactcgtgtccaaatgattgtttagttagagttaat |
299 |
Q |
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| T |
48315370 |
aactcgtgtccaaatgattgtttagttagagttaat |
48315405 |
T |
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Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 32456541 - 32456376
Alignment:
| Q |
10 |
aataatatgagtaaatagtttagactctaatacaacagaaaaataatgcaatgaagagtccaagaga------atctctatctcttttgatatctcagta |
103 |
Q |
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| T |
32456541 |
aataatatgagtaaatagtttagactctaatacaacagaaaaataatgcaatgaagagtccaagaaacataaaatctctatctcttttgatatctcggtg |
32456442 |
T |
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| Q |
104 |
ataaattatcttaaaagtatactgtcttaacagaaaaactacatataaccaaatatttgaagcgtg |
169 |
Q |
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| T |
32456441 |
ataaattgtcttaaaagtatattgtcttaacagaaaaactacatataaccaaatatttgaagcgtg |
32456376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 32456082 - 32455948
Alignment:
| Q |
41 |
acaacagaaaaataatgcaatgaagagtccaaga------gaatctctatctcttttgatatctcagtaataaattatcttaaaagtatactgtcttaac |
134 |
Q |
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| T |
32456082 |
acaacagaaaaataatgcaattaagagtccaagaaatatagaatctctatctcttgtgatatctcaatgataaattgtcataaaagtatattgtcttaac |
32455983 |
T |
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| Q |
135 |
agaaaaactacatataaccaaatatttgaagcgtg |
169 |
Q |
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| T |
32455982 |
ataaaatctatatataaccaaatatttgaagcgtg |
32455948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 39177211 - 39177152
Alignment:
| Q |
107 |
aattatcttaaaagtatactgtcttaacagaaaaactacatataaccaaatatttgaagc |
166 |
Q |
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| T |
39177211 |
aattgtcttaaaattatactatattaacataaaaactacatatagccaaatatttgaagc |
39177152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 21635739 - 21635831
Alignment:
| Q |
74 |
agaatctctatctcttttgatatctcagtaataaattatcttaaaagtatactgtcttaacagaaaaactacatataaccaaatatttgaagc |
166 |
Q |
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| T |
21635739 |
agaatctctatcacttttaatatttcagtgataaattgacttaaaaagatattgttttcatagaaatactatagataaccaaatatttgaagc |
21635831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 21635326 - 21635408
Alignment:
| Q |
87 |
cttttgatatctcagtaataaattatcttaaaagtatactgtcttaacagaaaaactacatataaccaaatatttgaagcgtg |
169 |
Q |
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|||||||||| || | |||||||| |||||| |||| ||| || | || ||||||| |||||||||||||||||||||||| |
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| T |
21635326 |
cttttgatatttcgttgataaattactttaaaaatatattgttttcataggaaaactatatataaccaaatatttgaagcgtg |
21635408 |
T |
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