View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_70 (Length: 320)
Name: NF1314_high_70
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_70 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 60 - 310
Target Start/End: Original strand, 32378776 - 32379026
Alignment:
| Q |
60 |
tgtgtgtgtaagtggttgtattataggataattgtgtttataaataaattctaattccatcctagttgttataagttgtaattacttctgtcccatcgaa |
159 |
Q |
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| T |
32378776 |
tgtgtgtgtgagtggttgtattataggataattgtgtttataaataaattctaattccatcctagctgttataagttgtaattacttctgtcccatcgaa |
32378875 |
T |
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| Q |
160 |
aatctctgcctagcaatgcttgaattagttaagtttataaataatatcttgagcatgcatgctcctattgcagtatataaccacaatgcattcttcaact |
259 |
Q |
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| T |
32378876 |
aatctctgcctagcaatgcttgaattagttaagtttataaataatatcttgagcatgcatgctcctattgcagtatataaccacaatgcattcttcaact |
32378975 |
T |
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| Q |
260 |
ccttcaatcgcataatttacaatagttcagctttctccgaaacaagaataa |
310 |
Q |
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| T |
32378976 |
ccttcaatcgcataatttacaatagttcagctttctccaaaacaagaataa |
32379026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 32378728 - 32378766
Alignment:
| Q |
30 |
aacttcacttccaattccatgaatgcataatgtgtgtgt |
68 |
Q |
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| T |
32378728 |
aacttcacttccaattccatgaatgcataatgtgtgtgt |
32378766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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