View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_high_75 (Length: 314)

Name: NF1314_high_75
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_high_75
NF1314_high_75
[»] chr8 (9 HSPs)
chr8 (1-242)||(5842939-5843180)
chr8 (1-242)||(5849681-5849922)
chr8 (28-242)||(5887105-5887319)
chr8 (95-242)||(5949036-5949183)
chr8 (95-242)||(5984564-5984711)
chr8 (94-240)||(5960300-5960446)
chr8 (103-242)||(5921152-5921291)
chr8 (188-235)||(41351226-41351273)
chr8 (157-238)||(39916637-39916718)
[»] chr2 (1 HSPs)
chr2 (171-242)||(42788990-42789061)
[»] chr7 (1 HSPs)
chr7 (183-242)||(45676080-45676139)
[»] chr3 (2 HSPs)
chr3 (183-238)||(34626700-34626755)
chr3 (188-238)||(44674039-44674089)
[»] chr5 (2 HSPs)
chr5 (188-238)||(1281333-1281383)
chr5 (188-238)||(1319335-1319385)
[»] chr1 (3 HSPs)
chr1 (188-238)||(16127411-16127461)
chr1 (188-238)||(16138921-16138971)
chr1 (183-235)||(51044474-51044526)
[»] chr4 (1 HSPs)
chr4 (186-238)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5842939 - 5843180
Alignment:
Q  1 aaagacacttatttgaaaaagaaagatccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5842939 aaagacacttatttgaaaaagaaagatccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagct 5843038  T
Q  101 attgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5843039 attgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgttttaaatcaggtcttaga 5843138  T
Q  201 taatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5843139 taatttatccatcttaatctacaactttttccacatctctgc 5843180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5849681 - 5849922
Alignment:
Q  1 aaagacacttatttgaaaaagaaagatccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5849681 aaagacacttatttgaaaaagaaagatccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagca 5849780  T
Q  101 attgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849781 attgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttaga 5849880  T
Q  201 taatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5849881 taatttatccatcttaatctacaactttttccacatctctgc 5849922  T

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Target: chr8; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 5887105 - 5887319
Alignment:
Q  28 ccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctag 127  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5887105 ccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctag 5887204  T
Q  128 aatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactc 227  Q
    |||| |||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5887205 aatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactc 5887304  T
Q  228 tttccacatctctgc 242  Q
    ||||| |||||||||    
T  5887305 tttccgcatctctgc 5887319  T

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Target: chr8; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 5949036 - 5949183
Alignment:
Q  95 agagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggt 194  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  5949036 agagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggt 5949135  T
Q  195 cttagataatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5949136 cttagataatttatccatcttaatcttcaactctttccacatctctgc 5949183  T

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Target: chr8; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 5984564 - 5984711
Alignment:
Q  95 agagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggt 194  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  5984564 agagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggt 5984663  T
Q  195 cttagataatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5984664 cttagataatttatccatcttaatctgcaactctttccacatctctgc 5984711  T

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Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 5960300 - 5960446
Alignment:
Q  94 aagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcagg 193  Q
    |||||||| ||||||| |||||||||||||||| |||| |||| ||||||| ||||| |||||||||||  | |||||||||||||||||||||||||||    
T  5960300 aagagctaatgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatcagg 5960399  T
Q  194 tcttagataatttatccatcttaatctacaactctttccacatctct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5960400 tcttagataatttatccatcttaatctacaactctttccacatctct 5960446  T

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Target: chr8; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 5921152 - 5921291
Alignment:
Q  103 tgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagata 202  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||| |||  |||||| || ||||||||||||||||||||||||||||||||||||    
T  5921152 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5921251  T
Q  203 atttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5921252 atttatccatcttaatctgcaactctttccacatctctgc 5921291  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 41351226 - 41351273
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccaca 235  Q
    ||||||||| | |||||||||||||||||||| ||||||||| |||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccaca 41351273  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 39916718 - 39916637
Alignment:
Q  157 cttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    ||||||| | || |||| ||||||| || | ||||||||| |||||||| |||||||| ||||| || || |||||||||||    
T  39916718 cttcttcgtgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 42788990 - 42789061
Alignment:
Q  171 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || || ||||| |||||||||||||||    
T  42788990 aaacttccacgtttcaaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgc 42789061  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 45676080 - 45676139
Alignment:
Q  183 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgc 242  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgc 45676139  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 34626700 - 34626755
Alignment:
Q  183 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatct 34626755  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||| |||| ||||||| |||||||||| ||||||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 1319335 - 1319385
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||| |||||||||||  ||||||| | |||||||||||||||||||||    
T  1319335 atcaggccttagataattattccatctaagtctacaactctttccacatct 1319385  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    ||||| ||||| |||||| |||||||| |||||||||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 16138921 - 16138971
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    ||||||| ||| ||| || |||||||| |||||||||||||||||||||||    
T  16138921 atcaggttttaaatagttaatccatctcaatctacaactctttccacatct 16138971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 51044526 - 51044474
Alignment:
Q  183 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccaca 235  Q
    ||||||||||| || | ||| ||||||||||| |||||||| |||||||||||    
T  51044526 ttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccaca 51044474  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  186 aaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||||| || | ||| ||||||||||| |||||||||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

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