View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_high_77 (Length: 310)
Name: NF1314_high_77
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_77 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 47764185 - 47764466
Alignment:
| Q |
1 |
atataattctatgaatggcattccaaaaaatagcaaatcattaactcccagttcaatggaataaaaatcaatagtagtatatttgtacagctcgattaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47764185 |
atataattctatgaatggcattccaaaaaatagcaaatcattaactcccagttcaatggaataaaaatcaatagtagtatatttgtacagctcgattaca |
47764284 |
T |
|
| Q |
101 |
tagagatttttattcctctaacccaaatctcaaattgcttaagagatgagcagaacatcagctgccatcataattgtttgatagaataaattcttgtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47764285 |
tagagatttttattcctctaacccaaatctcaaattgcttaagagatgagcagaacatcagctgccatcataattgtttgatagaataaattcttgtgaa |
47764384 |
T |
|
| Q |
201 |
acactaaaaattaaaacaaaaacatcaaatagatgctcctcgtcaacatcaattatggcaattctaatcctttgattcaact |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47764385 |
acactaaaaattaaaacaaaaacatcaaatagatgctcctcgtcaacatcaattttggcaattctaatcctttgattcaact |
47764466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 21547067 - 21547127
Alignment:
| Q |
188 |
aaattcttgtgaaacactaaaaattaaaacaaaaacatcaaatagatgctcctcgtcaaca |
248 |
Q |
| |
|
||||| |||| |||||| ||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
21547067 |
aaatttttgttaaacacaaaagatcaaaacaaaaacagaaaatagatgctcctcgtcaaca |
21547127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University