View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_78 (Length: 304)
Name: NF1314_high_78
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30239651 - 30239877
Alignment:
| Q |
1 |
ggcaagaagaaagtcctagtcaagaaggatatccaaaaattcattgaaaaaccagctcttgagaaagcaaatcctcccatggacgatactcataagggaa |
100 |
Q |
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| T |
30239651 |
ggcaagaagaaagtcctagtcaagaaggatatcaaaaaattcattgaaaaaccagctcttgagaaagcaaatcctcccatggacgatactcataagggaa |
30239750 |
T |
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| Q |
101 |
gcaacgaatctacttcttttcatttcgcttgtgagaatgtgagtggtaacat---acatggtacacttggaatccatcatgaacctgtgttgcaactggt |
197 |
Q |
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| T |
30239751 |
gcaaagcatctacttcttttcatttcgcttgtgagaatgtgagtggtaacatagcacatgttacacttggaatccatcatgaacctgtgttgcaactggt |
30239850 |
T |
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| Q |
198 |
aatgcccactgcaccagtggttcataa |
224 |
Q |
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| T |
30239851 |
aatgcccactgcaccagtggttcataa |
30239877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 30239926 - 30240004
Alignment:
| Q |
219 |
tcataattgatacaaacactagtgcagaagccattgttattgatgctaacattgatattccaatagaagaagatattcat |
298 |
Q |
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| T |
30239926 |
tcataattgatactaacactagtgcagaagccattgttattgatactaacattgatatt-caatagaagaagatattcat |
30240004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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