View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_high_83 (Length: 293)
Name: NF1314_high_83
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_83 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 31321795 - 31321544
Alignment:
| Q |
7 |
gtgagatgaagagcatgatgaaaaacgcgtaccgtgacaatacccacctcctctaggaactaaccactacacataccttgtaaatttatgtaatttttgt |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321795 |
gtgagaggaagagcatgatgaaaaacgcctaccatgacaatacccacctcctctaggaactaaccactacacataccttgtaaatttatgtaatttttgt |
31321696 |
T |
|
| Q |
107 |
gtgtctaatcagacttctcaattttgtatttatagtgtatttgctataaatacaagttaatgtgatttctaattccaacttactaagttctaaattccaa |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31321695 |
gtgtctaatcagacttctcaatactgtatttatagtgtatttgctataaatacaagttaatgtgattcctaattccaacttactaagttctaaattccaa |
31321596 |
T |
|
| Q |
207 |
t-ccataagcaagttgatgtatttcactttttatgaggtgcaagttaatgta |
257 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31321595 |
tcccataagcaagttgatgtaattcactttttatgaggtgcaagttaatgta |
31321544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 2131905 - 2131816
Alignment:
| Q |
95 |
tgtaatttttgtgtgtctaatcagacttctcaattttgtatttatagtgtatttgctataaatacaagttaatgtgatttctaattccaa |
184 |
Q |
| |
|
|||||||| ||||||||| || ||||| | ||| ||||||||| ||||||| | |||||||||||| |||||||| |||||||||| |
|
|
| T |
2131905 |
tgtaatttatgtgtgtcttatgagactacacaaagctgtatttatgatgtatttacaataaatacaagtcgatgtgattgctaattccaa |
2131816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University