View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_high_9 (Length: 607)
Name: NF1314_high_9
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 97 - 580
Target Start/End: Original strand, 24933336 - 24933826
Alignment:
| Q |
97 |
actatgtacctaagaaatatcaagaaaaaatcaatgaaagattatgcattgtcttnnnnnnnngtctcgatcacaattaattttggacttatatattgcc |
196 |
Q |
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| T |
24933336 |
actatgtacctaagaaatatcaagaaaaaatcaatgaaagattatgcattgtcttaaaaaaaagtctcgatcacaattaattttggacttatatattgcc |
24933435 |
T |
|
| Q |
197 |
atttcttcttcactaggcatgcattaaacaatcggttgatgatgtaaatgtgct-----------caagggtcacaaaacacgcttcatggtgcttcaca |
285 |
Q |
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| T |
24933436 |
atttctac---actagggatgcattaaacaatcggttgatgatgtaaatgtgctataaatgtgctcaagggtcacaaaacacgcttcatgttgcttcaca |
24933532 |
T |
|
| Q |
286 |
tnnnnnnntgcacacaaggtcaatagtgcaatagtttcatatttttagatcctaatacaaaaaagaataaacagcatttccannnnnnngtgaaatgagc |
385 |
Q |
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| T |
24933533 |
taaaaaaatgcacacaaggtcaatagtgcaataggtccatatttttagatccttatacaaaaaagaatatacagcatttccatttttttgtgaaatgagc |
24933632 |
T |
|
| Q |
386 |
tttgtcaatatagcaagaacaagaaagttggatgggagaggtctccaactcgtacaataaaaataataacaaagtcgatcatattgttagaatatgataa |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24933633 |
tttgtcaatatagcaagaacaagaaagttggatgggagaggtctccaactcgtacaataaaaataataacaaagtcgatcatattgttagaatatgataa |
24933732 |
T |
|
| Q |
486 |
aaacagcatttgtatacaatatggcatataaaatggaccatgacattcctttcaatacatcacaataacaacatgtataccacgaacctatgata |
580 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24933733 |
aaacagca-ttgtatacaatatggcatataaaatggaccatgacattcctttcaatacatcacaataacaacatgtataccacgaacctatgata |
24933826 |
T |
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