View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_1 (Length: 786)
Name: NF1314_low_1
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_1 |
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| [»] scaffold0291 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 93 - 488
Target Start/End: Complemental strand, 1632977 - 1632582
Alignment:
| Q |
93 |
cgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattttttgaaacctgaacatcttggtgctgagcaggaaaaacacgcacag |
192 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
1632977 |
cgttggtcatattcacaaatacgagcccataaatccaagtctctctggacattttttgagacctgaacatcttggtgctgagcaggaaaaatacgcacat |
1632878 |
T |
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| Q |
193 |
gagcaatattttcatgtataatctgaacttctattttgttactcacattttttgctgtaatgttcggccttgtttgagtttttgcattctgttccaattc |
292 |
Q |
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|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
1632877 |
gagcaatattatcatgtataatctgaacttatgttttgttactcacattttttgctgtaatgttcggccttgtttgagtttgtgcattccgttccaattc |
1632778 |
T |
|
| Q |
293 |
cataacatcaataaacggtggctggggtattactgcagtctttacatcatgactatcctcctgagtttcagtgatttcctccaggacatggactgatgta |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| |
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| T |
1632777 |
cataacatcaataaacggtggctggggtattactgcagtctttacatcatgactatcctcctgagattcagtgatttcccctaggacatggactgatgta |
1632678 |
T |
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| Q |
393 |
ctaggtaaccgctccttgtgaaattcatattcaacattctgtacctcagaagttacagccaagggctctttgtctgtctgcgggaccttgtgctct |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
1632677 |
ctaggtaaccgctccttgtgaaattcatattcaacattctgtacctcagaagttacagccaagggctctttgtctgtctgctggaccgtgtgctct |
1632582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 470 - 703
Target Start/End: Complemental strand, 1632565 - 1632331
Alignment:
| Q |
470 |
ctgcgggaccttgtgctcttccacttgaaaatccggagtggacacatcaattggccgttcctcctcctgtccggttgtggcaccagattgtgatagtaat |
569 |
Q |
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|||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
1632565 |
ctgcaggaccgtgtgctcttccatttgaaactccggagtggacacatcaattggccgttcctcctcctatccggttggggcaccagattgtgatagtaat |
1632466 |
T |
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| Q |
570 |
tgaatagcatcaggttgcggtattgtattgtcagctgcaacgtcattgatcaccggagcttcgaaagatttagatgaacctatgccgtcttgattatctt |
669 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
1632465 |
tgaataacatcaggccgcggtattgtattgtcagctgcaacgtcattgatcaccggagcttcaaaagctttagatgaacctatgccgtctggattatctt |
1632366 |
T |
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| Q |
670 |
tgggc-tgccatttccgagtctgctgtttctgtgg |
703 |
Q |
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| T |
1632365 |
tgggcttgccatttctgattctgctgtttctgtgg |
1632331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 26657236 - 26657132
Alignment:
| Q |
93 |
cgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattttttgaaacctgaacatcttggtgctgagcaggaaaaacacgcacag |
192 |
Q |
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||||| ||||||||||||||||| ||| |||||||||| || |||||||||| || ||||| ||| |||||||||||| ||||| ||||| ||||| |
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| T |
26657236 |
cgttgatcatattcacgaatacgtgcctataaatccaaatcattctggacattcttcgaaactggaatctcttggtgctgaacaggagcaacacacacag |
26657137 |
T |
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| Q |
193 |
gagca |
197 |
Q |
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||||| |
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| T |
26657136 |
gagca |
26657132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 15979 - 16046
Alignment:
| Q |
93 |
cgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattttttgaaacctgaac |
160 |
Q |
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| T |
15979 |
cgtttgtcatattcacgaattctagcccataaatccaagtcattctggacatttctagaaatctgaac |
16046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 99271 - 99218
Alignment:
| Q |
93 |
cgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattt |
146 |
Q |
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|||| ||||||||||||||| | |||||||||||||||||| ||||||||||| |
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| T |
99271 |
cgtttgtcatattcacgaattctagcccataaatccaagtcattctggacattt |
99218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 10996875 - 10996778
Alignment:
| Q |
99 |
tcatattcacgaatacgagcccataaatccaagtctctctggacattttttgaaacctgaacatcttggtgctgagcaggaaaaacacgcacaggagca |
197 |
Q |
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|||||||||||||| || ||||||| |||||||| || |||| |||||| |||||||||| || || || |||| |||||| | ||||||||||||| |
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| T |
10996875 |
tcatattcacgaattcggacccataa-tccaagtccctttggaaatttttcgaaacctgaatttcctgatggtgagtaggaaacatacgcacaggagca |
10996778 |
T |
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