View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_107 (Length: 296)
Name: NF1314_low_107
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_107 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 7421288 - 7421542
Alignment:
| Q |
30 |
aattcaaccaccagcatttttgataattttatttttaaggaaagcattgtttgatttggttcatatatgttgataatttgggttcttatgcaactgcctc |
129 |
Q |
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| T |
7421288 |
aattcaaccaccagcatttttgataattttatttttaaggaaagcattgtttgatttggttcatgta----gataagttgggttctcatgcaactgcctc |
7421383 |
T |
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| Q |
130 |
tgttcatcgttttaaatgtttccttactatatatcttggatgaccacacttgattcatttatgttttccttaaacagttttatgtctccaaaagcatcgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7421384 |
tgttcatcgttttaaatgtttccttactatatatcttggatgaccacacttgcttcatttatgttttccttaaacagttttatgtctccaaaagcatcgt |
7421483 |
T |
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| Q |
230 |
tcaccaaactagctgtcctcacgcccaaatacctcactcgaccttattggtcctatgct |
288 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7421484 |
tcaccaaactagctgtcctcacgcccaaatgcctcactcgaccttattggtcctatgct |
7421542 |
T |
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