View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_109 (Length: 288)
Name: NF1314_low_109
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_109 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 3221232 - 3220983
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
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| T |
3221232 |
aagaacattgatctaagtggaaaagtagtggtgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
3221133 |
T |
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| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221132 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
3221033 |
T |
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| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattca |
259 |
Q |
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| T |
3221032 |
caaagaatacataaaatcaacttacaatccatcagcaacattgatattca |
3220983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 3231465 - 3231216
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
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||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||| |||||||||| ||||| | |
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| T |
3231465 |
aagaacatcgatctaagtggaaaagtagtgttgtgtgatatcggaggacgtgttccaagcactgtgaaaggacaagaagttttaaattcaggtggtgtag |
3231366 |
T |
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| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
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| T |
3231365 |
cagtgattcttgtaaactcagaaagtgatggtttcagcacttttgctactgctcatgttctacctgcggttgaagtgagttacaaagctggtttaacaat |
3231266 |
T |
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| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattca |
259 |
Q |
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| T |
3231265 |
caaagattacataaactcaacctacaatccaacagcaacattgatattca |
3231216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 3226214 - 3225970
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
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||||| |||||| |||| |||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||| ||| | | |
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| T |
3226214 |
aagaacattgatttaagcggaaaagtagtgctgtgtgatgt---aggaaatgtctcaagtattgtgaaaggacaagaagttctaaattcaggtggtatag |
3226118 |
T |
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| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
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| ||||| ||||||||||||||| ||||||||||||| |||| ||||| |||||||||| ||||||| ||| || ||||||| ||||||||||||||||| |
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| T |
3226117 |
caatgatacttgcaaattcagaagcacttggtttcagtacttttgctattgctcatgttctacctgcagttgaagtgagttatgcagctggtttaacaat |
3226018 |
T |
|
| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttatt |
257 |
Q |
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|||| |||||||||||||| |||||||| ||||||||||| |||| |
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| T |
3226017 |
caaatcttacataaaatcaacatacaatccgacagcaacattgatatt |
3225970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 3240264 - 3240015
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
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|||||||||||||||||||||||||| |||||||||||| | || | | ||||||||| |||||||||||||||||||||||||| || ||||| | |
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| T |
3240264 |
aagaatattgatctaagtggaaaagttgtgttgtgtgatataggtgaagatgtttcaacctttgtgaaaggacaagaagttctaaatgcaaatggtgtag |
3240165 |
T |
|
| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
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| T |
3240164 |
cagtgattcttgtaaactcagaaagtgatggtttcagcacttttgctactgctcatgttctgccagcagttgaagtgagttatgcagctggtttaacaat |
3240065 |
T |
|
| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattca |
259 |
Q |
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|||||| ||||| || ||||||||||||||| |||||||||||||||||| |
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| T |
3240064 |
caaagattacattaactcaacctacaatccaacagcaacattgttattca |
3240015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 3178576 - 3178825
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| | || | | ||||||||| |||||||||||||||||||||||||| || ||||| | |
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| T |
3178576 |
aagaatattgatctaagtggaaaagttgtgttgtgtgatataggtgaagatgtttcaacctttgtgaaaggacaagaagttctaaatgcaaatggtgtag |
3178675 |
T |
|
| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
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| T |
3178676 |
cagtgattcttgtaaactcagaaagtgatggtttcagcacttttgctactgctcatgttctgccagcagttgaagtaagttatgcagctggtttaacaat |
3178775 |
T |
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| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattca |
259 |
Q |
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|||||| ||||| || ||||||||||||||| |||||||||||||||||| |
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| T |
3178776 |
caaagattacattaactcaacctacaatccaacagcaacattgttattca |
3178825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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