View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_11 (Length: 617)
Name: NF1314_low_11
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 9 - 577
Target Start/End: Original strand, 45096786 - 45097349
Alignment:
| Q |
9 |
gagatgaagcaagacccaaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgta |
108 |
Q |
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| T |
45096786 |
gagatgaagcaagacccaaaatacattgataagctaaaaaggtacaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgta |
45096885 |
T |
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| Q |
109 |
aattgcaaaacctaatctatttctaatataatcgtctctaatttggttaggcaactgagaccaccaagcataagaactcaaacttaaacgaagattagca |
208 |
Q |
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| T |
45096886 |
aattgtaaaacctaatctatttctaatatagtcgtctctaatttggttaggcaactgaaaccaccaagcataagaactcaaacttaaacgaagattagca |
45096985 |
T |
|
| Q |
209 |
agctaatcagcacattgatttactgctctgtaaatgtgaatagaatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttctt |
308 |
Q |
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| T |
45096986 |
agctaatcagcacgttgatttactgctctgtaaatgtgaatagaatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttctt |
45097085 |
T |
|
| Q |
309 |
caatcaacggccaagggacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagcactttatgctgcatttgtagcaccaatgagtt |
408 |
Q |
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| T |
45097086 |
caatcaacggccacgggacaaccttagaagacttgaaagccaagaaaacaagcatatttctcatgagcactctatgctgcattcgtagcaccaatgagtt |
45097185 |
T |
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| Q |
409 |
cagtattaagaacatttgagatccctaaattgcaggcaaattaaaaggacctaaaaactaagaattgcaatttcagaaaatgccaccacaaactgcgagg |
508 |
Q |
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| T |
45097186 |
cagtattaagaacatttgagatccctaaattgcaggc-----aaaaggacctaaaaactaagaattgcaatttcagaaaatgccaccacaaactgcgagg |
45097280 |
T |
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| Q |
509 |
ggcctaaactcctcaaaaggcaccattaggaggctcgattttaacattgaaagcttttaatattacaaa |
577 |
Q |
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| T |
45097281 |
ggcctaaactcctcaagaggcaccattaggaggctcgattttaacattgaaagcttttaatattacaaa |
45097349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 11775891 - 11775932
Alignment:
| Q |
318 |
gccaagggacaaccttagaagacttgaaagccaagaaaacaa |
359 |
Q |
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| T |
11775891 |
gccaagggacaaccttagaagacttgaaagctaagaaaacaa |
11775932 |
T |
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