View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_111 (Length: 283)
Name: NF1314_low_111
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_111 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 101 - 283
Target Start/End: Complemental strand, 5461581 - 5461399
Alignment:
| Q |
101 |
taaaggtcaaaaggaaaataaacaagttcaaccaccgcgcacaccgaaaacagacagccgagagttcaaggaactcatgaagctggacctagtagaatta |
200 |
Q |
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| T |
5461581 |
taaaggtcaaaaggataataaacaagttcaaccaccgcgcacaccgaaaacagacagccgagagttcaaggaactcatgaagctggacctagtagaatta |
5461482 |
T |
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| Q |
201 |
gacatgttacacttggttagcaatgtcagccattactgattattcacataacatcattaattgtacatttattactttctatt |
283 |
Q |
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| T |
5461481 |
gacatgttacacttggttagcaatgtcagccattactgattattcacataacatcattaattgtacatttattactttctatt |
5461399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 5461682 - 5461604
Alignment:
| Q |
25 |
catcaaggcagcaaatgaaatgaaaggaaaagtaaacaaagaatgagcgttgtgcaaagagaacatcaactatccataa |
103 |
Q |
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| T |
5461682 |
catcaaggcagcaaatgaattgaaaggaaaagtaaacaaagaatgagcgttgtgcaaagagaacatcaactatccataa |
5461604 |
T |
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