View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_112 (Length: 282)
Name: NF1314_low_112
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_112 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 34549742 - 34550014
Alignment:
| Q |
1 |
taacatcttcatctttgtcaaatttggtattttctaaataaat-tctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcatctctg |
99 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||| ||| | || |||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
34549742 |
taacatcttcatctttgtcaaatttagtattttctacataaatctct-tcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctg |
34549840 |
T |
|
| Q |
100 |
ggcagtcatcaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaa |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549841 |
ggcagtcattaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaa |
34549940 |
T |
|
| Q |
200 |
tatttcctccaatattggaaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
34549941 |
tatttcctccaatattggaaatttaatcttagctttctgttgtgaacaattattcctaatgatctccttcatct |
34550014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 34377638 - 34377366
Alignment:
| Q |
1 |
taacatcttcatctttgtcaaatttggtattttctaaataaattctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcatctctgg |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
34377638 |
taacatcttcatctatgtcaaatttggtatcttctacacaaattctataaatacctggagtgtacaagattccattgtaccaaaaggtcttcatctctgg |
34377539 |
T |
|
| Q |
101 |
gcagtcatcaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaat |
200 |
Q |
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||||||| ||||| |||| |||||||| |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
34377538 |
acagtcattaattagtatccactcacatgctggcatctcaacgtagcaatggaaagagctttcactgaaacatttgaggctaggaagcttctttagttta |
34377439 |
T |
|
| Q |
201 |
atttcctccaatattggaaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
273 |
Q |
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|||| | || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34377438 |
attttcatcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgatctccttcatct |
34377366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 135143 - 134952
Alignment:
| Q |
1 |
taacatcttcatctttgtcaaatttggtattttctaaataaattctataaatacctggagtgtacaagattccttcgtaacaaaaggtcttcatctctgg |
100 |
Q |
| |
|
|||||||||| | || ||||||||||||||||| |||| ||||| ||||| || ||| ||||| |||||||||||| | |||||||||||||||||||| |
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|
| T |
135143 |
taacatcttcgtattcgtcaaatttggtattttttaaagaaatttcataaagacgtggggtgtataagattccttcgaaccaaaaggtcttcatctctgg |
135044 |
T |
|
| Q |
101 |
gcagtcatcaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttct |
192 |
Q |
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|||||| |||||| ||| | ||||| ||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
135043 |
gcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacatttgaggctaggaagcttct |
134952 |
T |
|
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