View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_120 (Length: 269)
Name: NF1314_low_120
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_120 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 33526577 - 33526322
Alignment:
| Q |
16 |
atggtagtagggggtgagagagagaagttgaggggtgaagaaggagattgagggaagccatgnnnnnnngtgtggaagagatttttggaaaaaatgaga- |
114 |
Q |
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| T |
33526577 |
atggtagtagggggtgagagagagaagttgaggggtgaagaaggagattgagggaagccatgaaaaaaagtgtggaagagatttttggaaaaaatgagag |
33526478 |
T |
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| Q |
115 |
-ttactgtgttgtgttatagtagaagaagaaaaagacaagacaagaaagagttaaagtgttgagagtgttctgtgttcattcattcacacgcgtacttaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33526477 |
attactgtgttgtgttatagtagaagaagaaaaagacaagacaagaaagagttaaagtgttgagagtgttctgtgttcattcattcacacgcgtacttaa |
33526378 |
T |
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| Q |
214 |
taatgtgccacgttttgctatctccaaccaggattttggtctttcatttagtcaac |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33526377 |
taatgtgccacgttttgctatctccaaccaggattttggtctttcatttagtcaac |
33526322 |
T |
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