View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_121 (Length: 268)
Name: NF1314_low_121
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_121 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 6183086 - 6182880
Alignment:
| Q |
29 |
aaacatattaagaacaacacaattaaaaaatgttcattttcctgtcattggaacatctacccaattcagagttcctctcattcctctaccatcctttacc |
128 |
Q |
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| T |
6183086 |
aaacatatta-gaacaacacaattaaaaaatgttcattttcctgtcattggaacatctacccaattcagagttcctctcattcctctaccatcctttacc |
6182988 |
T |
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| Q |
129 |
nnnnnnncttgtgtggttaaatagtttacaattaaattagtttaaacaatttgttaacctacctatgacattctaaactacaatttcttaataatttaga |
228 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6182987 |
tttttttcttgtgaggttaaatagtttacaattaaattagtttaaacaatttgttcccctacctatgacattctaaactacaatttct---taatttaga |
6182891 |
T |
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| Q |
229 |
atgtaatttgt |
239 |
Q |
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||||||||||| |
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| T |
6182890 |
atgtaatttgt |
6182880 |
T |
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