View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_low_126 (Length: 257)

Name: NF1314_low_126
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_low_126
NF1314_low_126
[»] scaffold0154 (2 HSPs)
scaffold0154 (15-228)||(14591-14804)
scaffold0154 (15-228)||(24011-24224)
[»] scaffold0189 (1 HSPs)
scaffold0189 (15-221)||(539-745)


Alignment Details
Target: scaffold0154 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 14591 - 14804
Alignment:
Q  15 attcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 114  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14591 attcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 14690  T
Q  115 taccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggttcct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  14691 taccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggcgacataaaaagcggggttcct 14790  T
Q  215 ctgcattcgaaact 228  Q
    |||||||| |||||    
T  14791 ctgcattcaaaact 14804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 24011 - 24224
Alignment:
Q  15 attcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 114  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24011 attcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 24110  T
Q  115 taccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggttcct 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  24111 taccatctccaccactgcacacccaagtgcccaaatatccgccggagattcatgctcgccattgtttactgattccggcgacataaaaagcggggttcct 24210  T
Q  215 ctgcattcgaaact 228  Q
    |||||||| |||||    
T  24211 ctgcattcaaaact 24224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 745 - 539
Alignment:
Q  15 attcttcgggtatcaacggcgattcttttccggcaccaatccggagcaacaacgaccacatatttgaatctttctccaaattccaagctggttttccagt 114  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  745 attcttcgggtatcaccggcgattcttctccggtaccaatccgaagcaacaatgaccacatatttgaatctttctccaaattccatgctggttttccagt 646  T
Q  115 taccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggtgacataaaaagtggggttcct 214  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || | ||||||||||||||| |||||||||||||| |||||     
T  645 taccatctccaccaccgcacacccaagtgcccatatatccgccggagattcatgctcaccgtggtttactgattccggcgacataaaaagtggagttccc 546  T
Q  215 ctgcatt 221  Q
    |||||||    
T  545 ctgcatt 539  T

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