View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_127 (Length: 257)
Name: NF1314_low_127
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_127 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 4933168 - 4933394
Alignment:
| Q |
5 |
cttccagacttgaaaaaggtatagtttata--tactcaatattattaattttattgttgatttgttaaacaaattaatggttactcattaatcatttgga |
102 |
Q |
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| T |
4933168 |
cttccagacttgaaaaaggtatagtttatatatactcaatattattaattttattgttgatttgttaaacaaattaatggttactcattaatcatttgga |
4933267 |
T |
|
| Q |
103 |
tgtagatggataaggcttctgtattaggggatgctataaaccatgtgaaacagcttcaagaaaaagtgaagctattggaagaaaagaaccaaaggaataa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4933268 |
tgtagatggataaggcttctgtattaggggatgctataaaccatgtgaaacagcttcaagaaaaagtgaagctattggaagaaaagaaccaaaagaataa |
4933367 |
T |
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| Q |
203 |
cgtagaatctgtgtctatggtatatgt |
229 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4933368 |
cgtagaatctgtgtctatggtatatgt |
4933394 |
T |
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