View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_13 (Length: 575)
Name: NF1314_low_13
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 9 - 575
Target Start/End: Complemental strand, 45549199 - 45548633
Alignment:
| Q |
9 |
caacaatatcaaaagatgagcatccaacaaccactaacagaaagtgaaaaccacctcaagtggattttggtcacgagtcaattattcgtcaacactgcag |
108 |
Q |
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| T |
45549199 |
caacaaaatcaaaatatgagcatccaacaaccactaacagaaagtgaaaaccacctcaagtggattttggtcacgagtcaattattcgtcaacactgcag |
45549100 |
T |
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| Q |
109 |
aagcacttttcagactaaacatcccgtttggtattcttcaaggtaatcatcaagacagtcaagaccaaagtagcaagctgatattagattgcggctatga |
208 |
Q |
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| T |
45549099 |
aagcacttttcagactaaacatcccgttcggtattcttcaaggtaatcatcaagacagtcaagaccaacgtagcaagctgatattagattgcggctatga |
45549000 |
T |
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| Q |
209 |
agtgatgaaaagaaaggggatacggcaggaactcaaaattcatacttgttcaaaaatatcatcaatcactagtactgttaacttgataagatctctagat |
308 |
Q |
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| T |
45548999 |
agtgatgaaaagaaaggggatacggcaggaactcaaagttcatacttgttcaaaaatatcatcaatcactagtactgttaacttgataagatctctagat |
45548900 |
T |
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| Q |
309 |
gacttggttaagaagctgaacgaggacatggagaagattaaattctacggaaggaaaaagagtagcaaagttgatgttgaggactacctgcctaagatgc |
408 |
Q |
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| T |
45548899 |
gacttggttaagaagctgaacgaggacatggagaagattaaattctacggaaggaaaaagagtagcaaagttgatgttgaggactacctgcctaagatgc |
45548800 |
T |
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| Q |
409 |
ttgagcatgatatctacgaaaaatggcctgacatagattgcatgtgggatttaggttggaatgatgagacatctgcatttatcgaaaaatatgatgttat |
508 |
Q |
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| T |
45548799 |
ttgagcatgatatctatgaaaaatggcctgacatagattgcatgtgggatttaggttggaatgatgagacatctgcatttatcgaaaaatatgatgttat |
45548700 |
T |
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| Q |
509 |
aagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcacattc |
575 |
Q |
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| T |
45548699 |
aagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcacattc |
45548633 |
T |
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