View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_131 (Length: 256)
Name: NF1314_low_131
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_131 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 25516664 - 25516436
Alignment:
| Q |
1 |
tattctcggatatctgtattactatcatttgtgtttacttataggttcctaattctaaatcattgtttagggagggttataataatatatggtctcgtga |
100 |
Q |
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| T |
25516664 |
tattctcggatatctgtattactatcatttgtgtttacttataggttcctaattctaaatcattgtttagggagggttat---aatatatggtctcgtga |
25516568 |
T |
|
| Q |
101 |
aacataaccaaattgaataaaggnnnnnnnnntatttcagcaaataattcaattaatttatgaaactttaaaagtaaaacaggcttccctttaacataat |
200 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25516567 |
aacataactaaattgaataaagg-aaaaaaaatatttcagcaaataattcaattaatttatgaaactttaaaagtaaaaca---ttccctttaacataat |
25516472 |
T |
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| Q |
201 |
ctacacactttaaaccatatacaaaggtgatgatgt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25516471 |
ctacacactttaaaccatatacaaaggtgatgatgt |
25516436 |
T |
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