View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_136 (Length: 253)
Name: NF1314_low_136
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_136 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 1251147 - 1250906
Alignment:
| Q |
1 |
aatatgtaataacatgaaggatataaagaatgaattgatta-taagaataaaaattatgatagcttaccgttccaacaaagtctgttattcataagtnnn |
99 |
Q |
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| T |
1251147 |
aatatgtaataacatgaaggatataaagaatgaattgattaataagaataaaaattatgatagcttaccgttccaacaaagtctcttattcataagtaaa |
1251048 |
T |
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| Q |
100 |
nnnngtcataccacacatatatgaacaattcaaatagtataaccaccatgtggaacattaattaatcataaagattaaattcaatgagcaattttacatt |
199 |
Q |
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| T |
1251047 |
aaaagtcatac--cacatacatgaacaattcaaatagtataaccaccatgtggaacattaattaatcataaagattaaattcaatgagcaattttacatt |
1250950 |
T |
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| Q |
200 |
aaagtttctatcaacaaggaggtttttggacgtcaatacctatg |
243 |
Q |
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| T |
1250949 |
aacgtttctatcaacaaggaggtttttggacgtcaatccctatg |
1250906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 17232136 - 17232006
Alignment:
| Q |
113 |
cacatatatgaacaattcaaatagtataaccaccatgtg--------gaacattaattaatcataaagattaaattcaatgagcaattttacattaaagt |
204 |
Q |
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| T |
17232136 |
cacatacatgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatcataaagattaaattcaatgagcacctttagataaaaac |
17232037 |
T |
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| Q |
205 |
ttctatcaacaaggaggtttttggacgtcaa |
235 |
Q |
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| T |
17232036 |
ttttgtcaaccaggaggtttttggacgtcaa |
17232006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 38946323 - 38946370
Alignment:
| Q |
20 |
gatataaagaatgaattgatt-ataagaataaaaattatgatagctta |
66 |
Q |
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| T |
38946323 |
gatataaagaatgaattgattgataagaataaacattatgatagctta |
38946370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 45204598 - 45204540
Alignment:
| Q |
18 |
aggatataaagaatgaattgatta-taagaa--taaaaattatgatagcttaccgttcc |
73 |
Q |
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| T |
45204598 |
aggatataaagaatgaactgattaataagaaaataaaaattatgatagcttactgttcc |
45204540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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