View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_139 (Length: 252)
Name: NF1314_low_139
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_139 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29010196 - 29009953
Alignment:
| Q |
1 |
agtaatacaattactaacctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggcctaatgcttctaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29010196 |
agtaatacaattactaacctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggcctaatgcttctaat |
29010097 |
T |
|
| Q |
101 |
gtgttcactgttgacagtaacaatcctggctttgtggcacagcagatactgattcttgtgtcctgctctctctcaacatcaaactaaaagaaaaagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29010096 |
gtgttcactgttgacagtaacaatcctggctttgtggcacagcagatactgattcttgtgtcctgctctctctcaacatcaaactaaaagaaaaagaaaa |
29009997 |
T |
|
| Q |
201 |
gaacattacattgattacatttattcatgaacttggcctatgat |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29009996 |
gaacattacattgattacatttattcatgaacttggtctatgat |
29009953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 13148731 - 13148963
Alignment:
| Q |
11 |
ttactaacctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggcctaatgcttctaatgtgttcactg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13148731 |
ttactaacctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactgatgaatctcaaggcctaatgcttctaatgtgttcactg |
13148830 |
T |
|
| Q |
111 |
ttgacagtaacaatcctggctttgtggcacagcagatactgattcttgtgtcctgctct---ctctcaacatcaaactaaaagaaaaagaaaagaacatt |
207 |
Q |
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| T |
13148831 |
ttgacagtaacaatcctggctttgtggcacagcagatactgattcttgtgtcctggtctctcctctcaacatcaaact----gaaaaagaaaagaacatt |
13148926 |
T |
|
| Q |
208 |
acattgattacatttattcatgaacttggcctatgat |
244 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||| |
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| T |
13148927 |
acattaattacatttattcatgaacttggtctatgat |
13148963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 52002502 - 52002617
Alignment:
| Q |
17 |
acctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggcctaatgcttctaatgtgttcactgttgaca |
116 |
Q |
| |
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|||||||||||||| || |||| || ||||||||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| || | |
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| T |
52002502 |
acctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggata |
52002601 |
T |
|
| Q |
117 |
gtaacaatcctggctt |
132 |
Q |
| |
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| ||||| |||||||| |
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| T |
52002602 |
gcaacaaccctggctt |
52002617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 25901480 - 25901598
Alignment:
| Q |
17 |
acctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggccta---atgcttctaatgtgttcactgttg |
113 |
Q |
| |
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|||||||||||||| || |||| || ||||||||||||| ||| |||||| | || |||||||||||||||| ||||||| |||||||| ||||| | |
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| T |
25901480 |
acctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacatattgttgaatctcaaggcctaatgatgcttccaatgtgtttactgtgg |
25901579 |
T |
|
| Q |
114 |
acagtaacaatcctggctt |
132 |
Q |
| |
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| | ||||| |||||||| |
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| T |
25901580 |
atatcaacaaccctggctt |
25901598 |
T |
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