View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_142 (Length: 251)
Name: NF1314_low_142
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_142 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 6286542 - 6286649
Alignment:
| Q |
1 |
atcatccaagtgaaacccgtttgtatccacgtcaattgtgattatggttgtttgtaaaaacaaccttcccaatataagaggagatgaattatcaccattc |
100 |
Q |
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| T |
6286542 |
atcatccaagtgaaatccgttcgtatccacgtcaattgtgattatggctgtttgtaaaaacaaccttcccaatataagaggagatgaattatcaccattc |
6286641 |
T |
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| Q |
101 |
acgtccaa |
108 |
Q |
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|||||||| |
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| T |
6286642 |
acgtccaa |
6286649 |
T |
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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 6286649 - 6286728
Alignment:
| Q |
145 |
atgataaggatattgaggcctttggaagttttgattattctctctatggtagttgttacaatattgattcttcactgctg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6286649 |
atgataaggatattgaggcctttggaagttttgattattctctctatggtagttgttacaatattgattcttcactgctg |
6286728 |
T |
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